C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0007P1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
PAX1 UCNEbase 9606 20:20492787-20700554
GeneTranscriptPositionBiotype
ENSG00000213384 (EIF4E2P1)
eukaryotic translation initiation factor 4E family member 2 pseudogene 1
ENST00000393781 (EIF4E2P1-001) 20659710-20659964 processed_pseudogene
CIL_0007P1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
PAX1 UCNEbase 9606 20:20700555-20946612
GeneTranscriptPositionBiotype
ENSG00000188559 (RALGAPA2)
Ral GTPase activating protein, alpha subunit 2 (catalytic)
ENST00000202677 (RALGAPA2-008) 20392767-20712488 protein_coding
ENST00000424981 (RALGAPA2-005) 20635351-20640806 retained_intron
ENST00000427175 (RALGAPA2-007) 20470933-20512600 protein_coding
ENST00000430436 (RALGAPA2-002) 20389552-20639900 protein_coding
ENST00000495793 (RALGAPA2-003) 20598784-20605412 processed_transcript
ENST00000620717 (RALGAPA2-201) 20392768-20512658 protein_coding
ENSG00000225803 (MRPS11P1)
mitochondrial ribosomal protein S11 pseudogene 1
ENST00000437558 (MRPS11P1-001) 20854121-20854642 processed_pseudogene
ENSG00000278525 (Metazoa_SRP)
Metazoan signal recognition particle RNA
ENST00000461220 (Metazoa_SRP.1-476) 20738433-20738731 misc_RNA
CIL_0007P1_0003 (Click to Hide/Show)
Notice (8): Undefined index: CIL_0007P1_0003 [APP/View/Region/show.ctp, line 46]
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]
Source ID Type Tax ID Position
PAX1 UCNEbase 9606 20:20946613-20956483
GeneTranscriptPositionBiotype
CIL_0007P1_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
PAX1 UCNEbase 9606 20:20956484-21163908
GeneTranscriptPositionBiotype
ENSG00000199509 (RNA5SP477)
RNA, 5S ribosomal pseudogene 477
ENST00000362639 (RNA5SP477-201) 21138956-21139074 rRNA
ENSG00000225127 (LINC00237)
long intergenic non-protein coding RNA 237
ENST00000420705 (LINC00237-002) 21093558-21106334 lincRNA
ENST00000455890 (LINC00237-003) 21092809-21101559 lincRNA
ENST00000593272 (LINC00237-004) 21087604-21106358 lincRNA
ENSG00000234104 (RP5-1177M21.1)
ENST00000432942 (RP5-1177M21.1-001) 20970448-20972562 lincRNA
ENSG00000235065 (RPL24P2)
ribosomal protein L24 pseudogene 2
ENST00000421023 (RPL24P2-001) 21114723-21115197 processed_pseudogene
CIL_0007P1_0005 (Click to Hide/Show)
Source ID Type Tax ID Position
PAX1 UCNEbase 9606 20:21163909-21195374
GeneTranscriptPositionBiotype
ENSG00000214535 (RPS15AP1)
ribosomal protein S15a pseudogene 1
ENST00000457423 (RPS15AP1-001) 21166206-21166596 processed_pseudogene
CIL_0007P1_0006 (Click to Hide/Show)
Notice (8): Undefined index: CIL_0007P1_0006 [APP/View/Region/show.ctp, line 46]
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]
Source ID Type Tax ID Position
PAX1 UCNEbase 9606 20:21195375-21205522
GeneTranscriptPositionBiotype
CIL_0007P1_0007 (Click to Hide/Show)
Source ID Type Tax ID Position
PAX1 UCNEbase 9606 20:21205523-21382653
GeneTranscriptPositionBiotype
ENSG00000088930 (XRN2)
5'-3' exoribonuclease 2
ENST00000377191 (XRN2-001) 21303304-21389827 protein_coding
CIL_0007P1_0008 (Click to Hide/Show)
Source ID Type Tax ID Position
PAX1 UCNEbase 10090 2:146325178-147069451
GeneTranscriptPositionBiotype
ENSMUSG00000027433 (Xrn2)
5'-3' exoribonuclease 2
ENSMUST00000028921 (Xrn2-001) 147012996-147078000 protein_coding
ENSMUST00000136136 (Xrn2-003) 147042546-147047822 retained_intron
ENSMUST00000137358 (Xrn2-004) 147061440-147068900 retained_intron
ENSMUST00000147057 (Xrn2-002) 147029552-147038287 retained_intron
ENSMUSG00000074749 (Kiz)
kizuna centrosomal protein
ENSMUST00000099278 (Kiz-001) 146855864-146970097 protein_coding
ENSMUST00000135595 (Kiz-003) 146952883-146970092 retained_intron
ENSMUST00000156232 (Kiz-002) 146855909-146889295 protein_coding
ENSMUSG00000080870 (Gm14111)
predicted gene 14111
ENSMUST00000119851 (Gm14111-001) 146754707-146755705 processed_pseudogene
ENSMUSG00000085796 (4933406D12Rik)
RIKEN cDNA 4933406D12 gene
ENSMUST00000147212 (4933406D12Rik-001) 146542931-146546108 lincRNA
ENSMUSG00000087618 (Gm14114)
predicted gene 14114
ENSMUST00000139345 (Gm14114-001) 146828327-146839732 lincRNA
CIL_0007P1_0009 (Click to Hide/Show)
Source ID Type Tax ID Position
PAX1 UCNEbase 7955 17:42024663-42207196
GeneTranscriptPositionBiotype
ENSDARG00000079753 (KIZ)
kizuna centrosomal protein
ENSDART00000111537 (KIZ-001) 42107843-42160969 protein_coding
ENSDART00000147563 (KIZ-002) 42143685-42160858 protein_coding
CIL_0007P1_000A (Click to Hide/Show)
Source ID Type Tax ID Position
PAX1 UCNEbase 7955 20:48975010-49065915
GeneTranscriptPositionBiotype
ENSDARG00000094359 (si:ch211-284a16.2)
si:ch211-284a16.2
ENSDART00000143470 (si:ch211-284a16.2-001) 48996966-48998022 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007P1_0001ENSG00000213384ENST00000393781CIL_0007P1_0002ENSG00000188559ENST00000202677ENST00000424981ENST00000427175ENST00000430436ENST00000495793ENST00000620717ENSG00000225803ENST00000437558ENSG00000278525ENST00000461220CIL_0007P1_0004ENSG00000199509ENST00000362639ENSG00000225127ENST00000420705ENST00000455890ENST00000593272ENSG00000234104ENST00000432942ENSG00000235065ENST00000421023CIL_0007P1_0005ENSG00000214535ENST00000457423CIL_0007P1_0007ENSG00000088930ENST00000377191CIL_0007P1_0008ENSMUSG00000027433ENSMUST00000028921ENSMUST00000136136ENSMUST00000137358ENSMUST00000147057ENSMUSG00000074749ENSMUST00000099278ENSMUST00000135595ENSMUST00000156232ENSMUSG00000080870ENSMUST00000119851ENSMUSG00000085796ENSMUST00000147212ENSMUSG00000087618ENSMUST00000139345CIL_0007P1_0009ENSDARG00000079753ENSDART00000111537ENSDART00000147563CIL_0007P1_000AENSDARG00000094359ENSDART00000143470
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007P1_0001ENSG00000213384ENST00000393781CIL_0007P1_0002ENSG00000188559ENST00000202677ENST00000430436ENST00000495793ENSG00000225803ENST00000437558ENSG00000278525ENST00000461220CIL_0007P1_0004ENSG00000199509ENST00000362639ENSG00000225127ENST00000420705ENST00000455890ENST00000593272ENSG00000234104ENST00000432942ENSG00000235065ENST00000421023CIL_0007P1_0005ENSG00000214535ENST00000457423CIL_0007P1_0007ENSG00000088930ENST00000377191CIL_0007P1_0008ENSMUSG00000027433ENSMUST00000028921ENSMUST00000137358ENSMUST00000147057ENSMUSG00000074749ENSMUST00000099278ENSMUST00000156232ENSMUSG00000080870ENSMUST00000119851ENSMUSG00000085796ENSMUST00000147212ENSMUSG00000087618ENSMUST00000139345CIL_0007P1_0009ENSDARG00000079753ENSDART00000111537CIL_0007P1_000AENSDARG00000094359ENSDART00000143470
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000213384 ENST00000393781 0.218±0.00 N/A N/A N/A N/A N/A N/A 2.808±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000188559 ENST00000202677 N/A 1.476±0.00 2.484±0.00 N/A N/A 3.009±0.00 N/A 3.131±0.00 N/A N/A 1.944±0.00 4.798±0.00 N/A 0.891±0.00
ENST00000424981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430436 4.480±0.00 2.545±0.00 1.674±0.00 0.471±0.20 3.312±1.65 1.549±0.00 0.449±0.00 4.825±0.69 2.695±0.98 4.826±1.31 2.917±0.00 3.113±2.23 3.190±0.50 2.734±1.13
ENST00000495793 N/A N/A 11.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225803 ENST00000437558 N/A 0.099±0.00 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.280±0.25
ENSG00000278525 ENST00000461220 N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 N/A 0.060±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000199509 ENST00000362639 N/A 0.224±0.00 N/A 0.489±0.00 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.828±0.00
ENSG00000225127 ENST00000420705 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A 0.359±0.00
ENST00000455890 0.065±0.00 0.023±0.00 N/A 0.205±0.00 N/A N/A N/A 0.057±0.00 N/A N/A N/A 0.140±0.00 N/A 0.139±0.00
ENST00000593272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.00 N/A 0.072±0.00
ENSG00000234104 ENST00000432942 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235065 ENST00000421023 6.025±0.00 5.354±0.00 N/A 0.854±0.00 2.282±2.20 3.918±0.00 1.328±0.00 1.628±0.00 0.795±0.00 5.534±0.00 3.719±0.00 1.032±0.62 0.631±0.26 1.970±1.78
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000214535 ENST00000457423 0.117±0.00 0.167±0.00 0.218±0.00 0.124±0.04 1.728±0.00 0.156±0.00 0.158±0.06 0.252±0.00 0.259±0.00 0.280±0.00 1.099±0.00 0.854±0.98 0.450±0.33 0.313±0.20
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088930 ENST00000377191 17.612±0.00 15.565±0.00 1.532±0.00 3.453±1.28 10.045±1.85 8.251±3.12 6.860±3.72 11.647±4.07 6.414±0.81 7.453±4.14 8.171±7.57 14.247±6.28 16.650±3.03 21.002±0.33
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027433 ENSMUST00000028921 7.458±1.98 2.801±0.86 15.858±1.63 15.664±7.48 6.124±1.54 4.581±1.08 3.538±0.48 5.883±0.50 9.748±5.82 7.628±1.32 3.628±0.22 11.268±10.52 18.332±6.88 11.947±1.87
ENSMUST00000136136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137358 N/A 3.904±0.29 N/A N/A N/A 8.000±1.18 N/A N/A 7.306±0.00 N/A N/A N/A N/A N/A
ENSMUST00000147057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.492±0.00 43.586±0.00 50.204±0.00
ENSMUSG00000074749 ENSMUST00000099278 2.718±0.50 1.273±0.57 8.198±0.69 5.120±1.26 3.949±0.74 2.072±0.61 8.538±0.76 4.812±0.78 3.344±0.90 5.166±0.57 7.943±0.62 5.651±5.51 3.408±1.34 60.870±18.49
ENSMUST00000135595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156232 N/A 1.500±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080870 ENSMUST00000119851 0.151±0.06 0.173±0.08 0.020±0.00 0.049±0.03 0.177±0.07 0.223±0.07 0.225±0.09 0.263±0.07 0.071±0.05 0.097±0.04 0.136±0.05 0.230±0.15 0.050±0.04 0.058±0.03
ENSMUSG00000085796 ENSMUST00000147212 N/A N/A 0.049±0.01 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.494±0.24
ENSMUSG00000087618 ENSMUST00000139345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000079753 ENSDART00000111537 N/A N/A N/A 1.681±0.00 N/A N/A 0.749±0.49 1.569±0.00 0.110±0.00 N/A N/A N/A N/A N/A
ENSDART00000147563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000094359 ENSDART00000143470 N/A N/A N/A 0.679±0.47 N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A N/A N/A

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