Notice (8): Undefined index: CIL_0007P1_0006 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007P1_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000213384' => 'eukaryotic translation initiation factor 4E family member 2 pseudogene 1',
'ENSG00000188559' => 'Ral GTPase activating protein, alpha subunit 2 (catalytic)',
'ENSG00000225803' => 'mitochondrial ribosomal protein S11 pseudogene 1',
'ENSG00000270793' => 'LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene 1',
'ENSG00000278525' => 'Metazoan signal recognition particle RNA',
'ENSG00000088970' => 'kizuna centrosomal protein',
'ENSG00000199509' => 'RNA, 5S ribosomal pseudogene 477',
'ENSG00000225127' => 'long intergenic non-protein coding RNA 237',
'ENSG00000228604' => null,
'ENSG00000232712' => 'KIZ antisense RNA 1',
'ENSG00000234104' => null,
'ENSG00000235065' => 'ribosomal protein L24 pseudogene 2',
'ENSG00000214535' => 'ribosomal protein S15a pseudogene 1',
'ENSG00000088930' => '5'-3' exoribonuclease 2',
'ENSG00000226875' => 'zinc finger protein 877, pseudogene',
'ENSG00000275457' => null,
'ENSMUSG00000027433' => '5'-3' exoribonuclease 2',
'ENSMUSG00000037110' => 'Ral GTPase activating protein, alpha subunit 2 (catalytic)',
'ENSMUSG00000074749' => 'kizuna centrosomal protein',
'ENSMUSG00000080870' => 'predicted gene 14111',
'ENSMUSG00000085796' => 'RIKEN cDNA 4933406D12 gene',
'ENSMUSG00000087618' => 'predicted gene 14114',
'ENSDARG00000079753' => 'kizuna centrosomal protein',
'ENSDARG00000069092' => '5'-3' exoribonuclease 2',
'ENSDARG00000094359' => 'si:ch211-284a16.2',
'ENSDARG00000094689' => 'si:ch211-284a16.3'
),
'gene_name_arr' => array(
'ENSG00000213384' => 'EIF4E2P1',
'ENSG00000188559' => 'RALGAPA2',
'ENSG00000225803' => 'MRPS11P1',
'ENSG00000270793' => 'LLPHP1',
'ENSG00000278525' => 'Metazoa_SRP',
'ENSG00000088970' => 'KIZ',
'ENSG00000199509' => 'RNA5SP477',
'ENSG00000225127' => 'LINC00237',
'ENSG00000228604' => 'RP5-872K7.7',
'ENSG00000232712' => 'KIZ-AS1',
'ENSG00000234104' => 'RP5-1177M21.1',
'ENSG00000235065' => 'RPL24P2',
'ENSG00000214535' => 'RPS15AP1',
'ENSG00000088930' => 'XRN2',
'ENSG00000226875' => 'ZNF877P',
'ENSG00000275457' => 'RP1-198K11.5',
'ENSMUSG00000027433' => 'Xrn2',
'ENSMUSG00000037110' => 'Ralgapa2',
'ENSMUSG00000074749' => 'Kiz',
'ENSMUSG00000080870' => 'Gm14111',
'ENSMUSG00000085796' => '4933406D12Rik',
'ENSMUSG00000087618' => 'Gm14114',
'ENSDARG00000079753' => 'KIZ',
'ENSDARG00000069092' => 'xrn2',
'ENSDARG00000094359' => 'si:ch211-284a16.2',
'ENSDARG00000094689' => 'si:ch211-284a16.3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 54 => 'Brain',
(int) 76 => 'Breast',
(int) 95 => 'Colon',
(int) 114 => 'Heart',
(int) 129 => 'Kidney',
(int) 150 => 'Liver',
(int) 169 => 'Lung',
(int) 184 => 'Muscle',
(int) 200 => 'Ovary',
(int) 225 => 'Placenta',
(int) 245 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 86,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000393781' => array(
'start' => '20659710',
'end' => '20659964',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'EIF4E2P1-001'
),
'ENST00000202677' => array(
'start' => '20392767',
'end' => '20712488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-008'
),
'ENST00000424981' => array(
'start' => '20635351',
'end' => '20640806',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RALGAPA2-005'
),
'ENST00000427175' => array(
'start' => '20470933',
'end' => '20512600',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-007'
),
'ENST00000430436' => array(
'start' => '20389552',
'end' => '20639900',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-002'
),
'ENST00000495793' => array(
'start' => '20598784',
'end' => '20605412',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RALGAPA2-003'
),
'ENST00000620717' => array(
'start' => '20392768',
'end' => '20512658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-201'
),
'ENST00000437558' => array(
'start' => '20854121',
'end' => '20854642',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS11P1-001'
),
'ENST00000603571' => array(
'start' => '20721187',
'end' => '20721879',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LLPHP1-001'
),
'ENST00000461220' => array(
'start' => '20738433',
'end' => '20738731',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-476'
),
'ENST00000419359' => array(
'start' => '21218464',
'end' => '21246620',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-001'
),
'ENST00000423272' => array(
'start' => '21244471',
'end' => '21246618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-006'
),
'ENST00000441136' => array(
'start' => '21226140',
'end' => '21232914',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-005'
),
'ENST00000451772' => array(
'start' => '21218459',
'end' => '21244354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-004'
),
'ENST00000611685' => array(
'start' => '21126039',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-014'
),
'ENST00000612654' => array(
'start' => '21126014',
'end' => '21136449',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KIZ-011'
),
'ENST00000616679' => array(
'start' => '21145586',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-003'
),
'ENST00000616848' => array(
'start' => '21126052',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-013'
),
'ENST00000619179' => array(
'start' => '21145589',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-002'
),
'ENST00000619189' => array(
'start' => '21126054',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-007'
),
'ENST00000619574' => array(
'start' => '21125983',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-201'
),
'ENST00000620553' => array(
'start' => '21126060',
'end' => '21145655',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-010'
),
'ENST00000620891' => array(
'start' => '21126007',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-009'
),
'ENST00000621366' => array(
'start' => '21162083',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-008'
),
'ENST00000622184' => array(
'start' => '21126038',
'end' => '21133179',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-012'
),
'ENST00000362639' => array(
'start' => '21138956',
'end' => '21139074',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP477-201'
),
'ENST00000420705' => array(
'start' => '21093558',
'end' => '21106334',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-002'
),
'ENST00000455890' => array(
'start' => '21092809',
'end' => '21101559',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-003'
),
'ENST00000593272' => array(
'start' => '21087604',
'end' => '21106358',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-004'
),
'ENST00000425746' => array(
'start' => '21151668',
'end' => '21162890',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-872K7.7-001'
),
'ENST00000434043' => array(
'start' => '21148741',
'end' => '21158741',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-872K7.7-002'
),
'ENST00000433213' => array(
'start' => '21197462',
'end' => '21218289',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-003'
),
'ENST00000443753' => array(
'start' => '21194404',
'end' => '21218289',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-001'
),
'ENST00000616177' => array(
'start' => '21154023',
'end' => '21218265',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-002'
),
'ENST00000432942' => array(
'start' => '20970448',
'end' => '20972562',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1177M21.1-001'
),
'ENST00000421023' => array(
'start' => '21114723',
'end' => '21115197',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL24P2-001'
),
'ENST00000457423' => array(
'start' => '21166206',
'end' => '21166596',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS15AP1-001'
),
'ENST00000377191' => array(
'start' => '21303304',
'end' => '21389827',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XRN2-001'
),
'ENST00000437614' => array(
'start' => '21265854',
'end' => '21266465',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'ZNF877P-001'
),
'ENST00000622628' => array(
'start' => '21302731',
'end' => '21303704',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-198K11.5-001'
),
'ENSMUST00000028921' => array(
'start' => '147012996',
'end' => '147078000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xrn2-001'
),
'ENSMUST00000136136' => array(
'start' => '147042546',
'end' => '147047822',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-003'
),
'ENSMUST00000137358' => array(
'start' => '147061440',
'end' => '147068900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-004'
),
'ENSMUST00000147057' => array(
'start' => '147029552',
'end' => '147038287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-002'
),
'ENSMUST00000109982' => array(
'start' => '146420078',
'end' => '146511911',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-003'
),
'ENSMUST00000109986' => array(
'start' => '146239879',
'end' => '146512004',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-001'
),
'ENSMUST00000124583' => array(
'start' => '146244784',
'end' => '146261375',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ralgapa2-002'
),
'ENSMUST00000124709' => array(
'start' => '146484868',
'end' => '146512026',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-009'
),
'ENSMUST00000131824' => array(
'start' => '146248199',
'end' => '146511899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-007'
),
'ENSMUST00000135974' => array(
'start' => '146429452',
'end' => '146512004',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-006'
),
'ENSMUST00000146024' => array(
'start' => '146404835',
'end' => '146412876',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-010'
),
'ENSMUST00000146307' => array(
'start' => '146258564',
'end' => '146387683',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ralgapa2-005'
),
'ENSMUST00000148784' => array(
'start' => '146360686',
'end' => '146406283',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-004'
),
'ENSMUST00000149499' => array(
'start' => '146243976',
'end' => '146447292',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-008'
),
'ENSMUST00000099278' => array(
'start' => '146855864',
'end' => '146970097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kiz-001'
),
'ENSMUST00000135595' => array(
'start' => '146952883',
'end' => '146970092',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Kiz-003'
),
'ENSMUST00000156232' => array(
'start' => '146855909',
'end' => '146889295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kiz-002'
),
'ENSMUST00000119851' => array(
'start' => '146754707',
'end' => '146755705',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14111-001'
),
'ENSMUST00000147212' => array(
'start' => '146542931',
'end' => '146546108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4933406D12Rik-001'
),
'ENSMUST00000139345' => array(
'start' => '146828327',
'end' => '146839732',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14114-001'
),
'ENSDART00000111537' => array(
'start' => '42107843',
'end' => '42160969',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-001'
),
'ENSDART00000147563' => array(
'start' => '42143685',
'end' => '42160858',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-002'
),
'ENSDART00000100239' => array(
'start' => '48986120',
'end' => '49020457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-201'
),
'ENSDART00000100246' => array(
'start' => '48985939',
'end' => '49073598',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-001'
),
'ENSDART00000137314' => array(
'start' => '49007041',
'end' => '49023831',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-003'
),
'ENSDART00000146596' => array(
'start' => '48986041',
'end' => '49073204',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'xrn2-002'
),
'ENSDART00000143470' => array(
'start' => '48996966',
'end' => '48998022',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-284a16.2-001'
),
'ENSDART00000137846' => array(
'start' => '48990498',
'end' => '48991157',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-284a16.3-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007P1_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007P1_0001' => array(
'genes_in_region' => array(
'ENSG00000213384' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Kidney'
)
),
'CIL_0007P1_0002' => array(
'genes_in_region' => array(
'ENSG00000188559' => array(
[maximum depth reached]
),
'ENSG00000225803' => array(
[maximum depth reached]
),
'ENSG00000278525' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Breast',
(int) 12 => 'Colon',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Bladder',
(int) 22 => 'Adrenal',
(int) 23 => 'Breast',
(int) 24 => 'Testis',
(int) 25 => 'Kidney',
(int) 26 => 'Lung'
)
),
'CIL_0007P1_0004' => array(
'genes_in_region' => array(
'ENSG00000199509' => array(
[maximum depth reached]
),
'ENSG00000225127' => array(
[maximum depth reached]
),
'ENSG00000234104' => array(
[maximum depth reached]
),
'ENSG00000235065' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Ovary',
(int) 14 => 'Placenta',
(int) 15 => 'Adipose',
(int) 16 => 'Lung',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Breast',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Kidney',
(int) 54 => 'Ovary',
(int) 55 => 'Testis',
(int) 56 => 'Ovary',
(int) 57 => 'Testis',
(int) 58 => 'Brain',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis'
)
),
'CIL_0007P1_0005' => array(
'genes_in_region' => array(
'ENSG00000214535' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis'
)
),
'CIL_0007P1_0007' => array(
'genes_in_region' => array(
'ENSG00000088930' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Adipose',
(int) 30 => 'Lung',
(int) 31 => 'Placenta',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Breast',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Brain',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis'
)
),
'CIL_0007P1_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000027433' => array(
[maximum depth reached]
),
'ENSMUSG00000074749' => array(
[maximum depth reached]
),
'ENSMUSG00000080870' => array(
[maximum depth reached]
),
'ENSMUSG00000085796' => array(
[maximum depth reached]
),
'ENSMUSG00000087618' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Colon',
(int) 16 => 'Liver',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adrenal',
(int) 35 => 'Colon',
(int) 36 => 'Ovary',
(int) 37 => 'Liver',
(int) 38 => 'Placenta',
(int) 39 => 'Adrenal',
(int) 40 => 'Colon',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adrenal',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Adrenal',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Kidney',
(int) 75 => 'Liver',
(int) 76 => 'Lung',
(int) 77 => 'Muscle',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Testis',
(int) 84 => 'Ovary'
)
),
'CIL_0007P1_0009' => array(
'genes_in_region' => array(
'ENSDARG00000079753' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver'
)
),
'CIL_0007P1_000A' => array(
'genes_in_region' => array(
'ENSDARG00000094359' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart'
)
)
)
$gene_desc_arr = array(
'ENSG00000213384' => 'eukaryotic translation initiation factor 4E family member 2 pseudogene 1',
'ENSG00000188559' => 'Ral GTPase activating protein, alpha subunit 2 (catalytic)',
'ENSG00000225803' => 'mitochondrial ribosomal protein S11 pseudogene 1',
'ENSG00000270793' => 'LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene 1',
'ENSG00000278525' => 'Metazoan signal recognition particle RNA',
'ENSG00000088970' => 'kizuna centrosomal protein',
'ENSG00000199509' => 'RNA, 5S ribosomal pseudogene 477',
'ENSG00000225127' => 'long intergenic non-protein coding RNA 237',
'ENSG00000228604' => null,
'ENSG00000232712' => 'KIZ antisense RNA 1',
'ENSG00000234104' => null,
'ENSG00000235065' => 'ribosomal protein L24 pseudogene 2',
'ENSG00000214535' => 'ribosomal protein S15a pseudogene 1',
'ENSG00000088930' => '5'-3' exoribonuclease 2',
'ENSG00000226875' => 'zinc finger protein 877, pseudogene',
'ENSG00000275457' => null,
'ENSMUSG00000027433' => '5'-3' exoribonuclease 2',
'ENSMUSG00000037110' => 'Ral GTPase activating protein, alpha subunit 2 (catalytic)',
'ENSMUSG00000074749' => 'kizuna centrosomal protein',
'ENSMUSG00000080870' => 'predicted gene 14111',
'ENSMUSG00000085796' => 'RIKEN cDNA 4933406D12 gene',
'ENSMUSG00000087618' => 'predicted gene 14114',
'ENSDARG00000079753' => 'kizuna centrosomal protein',
'ENSDARG00000069092' => '5'-3' exoribonuclease 2',
'ENSDARG00000094359' => 'si:ch211-284a16.2',
'ENSDARG00000094689' => 'si:ch211-284a16.3'
)
$gene_name_arr = array(
'ENSG00000213384' => 'EIF4E2P1',
'ENSG00000188559' => 'RALGAPA2',
'ENSG00000225803' => 'MRPS11P1',
'ENSG00000270793' => 'LLPHP1',
'ENSG00000278525' => 'Metazoa_SRP',
'ENSG00000088970' => 'KIZ',
'ENSG00000199509' => 'RNA5SP477',
'ENSG00000225127' => 'LINC00237',
'ENSG00000228604' => 'RP5-872K7.7',
'ENSG00000232712' => 'KIZ-AS1',
'ENSG00000234104' => 'RP5-1177M21.1',
'ENSG00000235065' => 'RPL24P2',
'ENSG00000214535' => 'RPS15AP1',
'ENSG00000088930' => 'XRN2',
'ENSG00000226875' => 'ZNF877P',
'ENSG00000275457' => 'RP1-198K11.5',
'ENSMUSG00000027433' => 'Xrn2',
'ENSMUSG00000037110' => 'Ralgapa2',
'ENSMUSG00000074749' => 'Kiz',
'ENSMUSG00000080870' => 'Gm14111',
'ENSMUSG00000085796' => '4933406D12Rik',
'ENSMUSG00000087618' => 'Gm14114',
'ENSDARG00000079753' => 'KIZ',
'ENSDARG00000069092' => 'xrn2',
'ENSDARG00000094359' => 'si:ch211-284a16.2',
'ENSDARG00000094689' => 'si:ch211-284a16.3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0001',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '20492787',
'seq_end' => '20700554',
'region_length' => '207767',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0002',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '20700555',
'seq_end' => '20946612',
'region_length' => '246057',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0003',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '20946613',
'seq_end' => '20956483',
'region_length' => '9870',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0004',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '20956484',
'seq_end' => '21163908',
'region_length' => '207424',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0005',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '21163909',
'seq_end' => '21195374',
'region_length' => '31465',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0006',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '21195375',
'seq_end' => '21205522',
'region_length' => '10147',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0007',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '21205523',
'seq_end' => '21382653',
'region_length' => '177130',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0008',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '146325178',
'seq_end' => '147069451',
'region_length' => '744273',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0009',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '42024663',
'seq_end' => '42207196',
'region_length' => '182533',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_000A',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '48975010',
'seq_end' => '49065915',
'region_length' => '90905',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 54 => 'Brain',
(int) 76 => 'Breast',
(int) 95 => 'Colon',
(int) 114 => 'Heart',
(int) 129 => 'Kidney',
(int) 150 => 'Liver',
(int) 169 => 'Lung',
(int) 184 => 'Muscle',
(int) 200 => 'Ovary',
(int) 225 => 'Placenta',
(int) 245 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 86
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000393781' => array(
'start' => '20659710',
'end' => '20659964',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'EIF4E2P1-001'
),
'ENST00000202677' => array(
'start' => '20392767',
'end' => '20712488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-008'
),
'ENST00000424981' => array(
'start' => '20635351',
'end' => '20640806',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RALGAPA2-005'
),
'ENST00000427175' => array(
'start' => '20470933',
'end' => '20512600',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-007'
),
'ENST00000430436' => array(
'start' => '20389552',
'end' => '20639900',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-002'
),
'ENST00000495793' => array(
'start' => '20598784',
'end' => '20605412',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RALGAPA2-003'
),
'ENST00000620717' => array(
'start' => '20392768',
'end' => '20512658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-201'
),
'ENST00000437558' => array(
'start' => '20854121',
'end' => '20854642',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS11P1-001'
),
'ENST00000603571' => array(
'start' => '20721187',
'end' => '20721879',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LLPHP1-001'
),
'ENST00000461220' => array(
'start' => '20738433',
'end' => '20738731',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-476'
),
'ENST00000419359' => array(
'start' => '21218464',
'end' => '21246620',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-001'
),
'ENST00000423272' => array(
'start' => '21244471',
'end' => '21246618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-006'
),
'ENST00000441136' => array(
'start' => '21226140',
'end' => '21232914',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-005'
),
'ENST00000451772' => array(
'start' => '21218459',
'end' => '21244354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-004'
),
'ENST00000611685' => array(
'start' => '21126039',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-014'
),
'ENST00000612654' => array(
'start' => '21126014',
'end' => '21136449',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KIZ-011'
),
'ENST00000616679' => array(
'start' => '21145586',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-003'
),
'ENST00000616848' => array(
'start' => '21126052',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-013'
),
'ENST00000619179' => array(
'start' => '21145589',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-002'
),
'ENST00000619189' => array(
'start' => '21126054',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-007'
),
'ENST00000619574' => array(
'start' => '21125983',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-201'
),
'ENST00000620553' => array(
'start' => '21126060',
'end' => '21145655',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-010'
),
'ENST00000620891' => array(
'start' => '21126007',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-009'
),
'ENST00000621366' => array(
'start' => '21162083',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-008'
),
'ENST00000622184' => array(
'start' => '21126038',
'end' => '21133179',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-012'
),
'ENST00000362639' => array(
'start' => '21138956',
'end' => '21139074',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP477-201'
),
'ENST00000420705' => array(
'start' => '21093558',
'end' => '21106334',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-002'
),
'ENST00000455890' => array(
'start' => '21092809',
'end' => '21101559',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-003'
),
'ENST00000593272' => array(
'start' => '21087604',
'end' => '21106358',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-004'
),
'ENST00000425746' => array(
'start' => '21151668',
'end' => '21162890',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-872K7.7-001'
),
'ENST00000434043' => array(
'start' => '21148741',
'end' => '21158741',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-872K7.7-002'
),
'ENST00000433213' => array(
'start' => '21197462',
'end' => '21218289',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-003'
),
'ENST00000443753' => array(
'start' => '21194404',
'end' => '21218289',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-001'
),
'ENST00000616177' => array(
'start' => '21154023',
'end' => '21218265',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-002'
),
'ENST00000432942' => array(
'start' => '20970448',
'end' => '20972562',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1177M21.1-001'
),
'ENST00000421023' => array(
'start' => '21114723',
'end' => '21115197',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL24P2-001'
),
'ENST00000457423' => array(
'start' => '21166206',
'end' => '21166596',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS15AP1-001'
),
'ENST00000377191' => array(
'start' => '21303304',
'end' => '21389827',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XRN2-001'
),
'ENST00000437614' => array(
'start' => '21265854',
'end' => '21266465',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'ZNF877P-001'
),
'ENST00000622628' => array(
'start' => '21302731',
'end' => '21303704',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-198K11.5-001'
),
'ENSMUST00000028921' => array(
'start' => '147012996',
'end' => '147078000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xrn2-001'
),
'ENSMUST00000136136' => array(
'start' => '147042546',
'end' => '147047822',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-003'
),
'ENSMUST00000137358' => array(
'start' => '147061440',
'end' => '147068900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-004'
),
'ENSMUST00000147057' => array(
'start' => '147029552',
'end' => '147038287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-002'
),
'ENSMUST00000109982' => array(
'start' => '146420078',
'end' => '146511911',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-003'
),
'ENSMUST00000109986' => array(
'start' => '146239879',
'end' => '146512004',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-001'
),
'ENSMUST00000124583' => array(
'start' => '146244784',
'end' => '146261375',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ralgapa2-002'
),
'ENSMUST00000124709' => array(
'start' => '146484868',
'end' => '146512026',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-009'
),
'ENSMUST00000131824' => array(
'start' => '146248199',
'end' => '146511899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-007'
),
'ENSMUST00000135974' => array(
'start' => '146429452',
'end' => '146512004',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-006'
),
'ENSMUST00000146024' => array(
'start' => '146404835',
'end' => '146412876',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-010'
),
'ENSMUST00000146307' => array(
'start' => '146258564',
'end' => '146387683',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ralgapa2-005'
),
'ENSMUST00000148784' => array(
'start' => '146360686',
'end' => '146406283',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-004'
),
'ENSMUST00000149499' => array(
'start' => '146243976',
'end' => '146447292',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-008'
),
'ENSMUST00000099278' => array(
'start' => '146855864',
'end' => '146970097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kiz-001'
),
'ENSMUST00000135595' => array(
'start' => '146952883',
'end' => '146970092',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Kiz-003'
),
'ENSMUST00000156232' => array(
'start' => '146855909',
'end' => '146889295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kiz-002'
),
'ENSMUST00000119851' => array(
'start' => '146754707',
'end' => '146755705',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14111-001'
),
'ENSMUST00000147212' => array(
'start' => '146542931',
'end' => '146546108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4933406D12Rik-001'
),
'ENSMUST00000139345' => array(
'start' => '146828327',
'end' => '146839732',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14114-001'
),
'ENSDART00000111537' => array(
'start' => '42107843',
'end' => '42160969',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-001'
),
'ENSDART00000147563' => array(
'start' => '42143685',
'end' => '42160858',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-002'
),
'ENSDART00000100239' => array(
'start' => '48986120',
'end' => '49020457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-201'
),
'ENSDART00000100246' => array(
'start' => '48985939',
'end' => '49073598',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-001'
),
'ENSDART00000137314' => array(
'start' => '49007041',
'end' => '49023831',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-003'
),
'ENSDART00000146596' => array(
'start' => '48986041',
'end' => '49073204',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'xrn2-002'
),
'ENSDART00000143470' => array(
'start' => '48996966',
'end' => '48998022',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-284a16.2-001'
),
'ENSDART00000137846' => array(
'start' => '48990498',
'end' => '48991157',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-284a16.3-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007P1_0001' => array(
'genes_in_region' => array(
'ENSG00000213384' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Kidney'
)
),
'CIL_0007P1_0002' => array(
'genes_in_region' => array(
'ENSG00000188559' => array(
[maximum depth reached]
),
'ENSG00000225803' => array(
[maximum depth reached]
),
'ENSG00000278525' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Breast',
(int) 12 => 'Colon',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Bladder',
(int) 22 => 'Adrenal',
(int) 23 => 'Breast',
(int) 24 => 'Testis',
(int) 25 => 'Kidney',
(int) 26 => 'Lung'
)
),
'CIL_0007P1_0004' => array(
'genes_in_region' => array(
'ENSG00000199509' => array(
[maximum depth reached]
),
'ENSG00000225127' => array(
[maximum depth reached]
),
'ENSG00000234104' => array(
[maximum depth reached]
),
'ENSG00000235065' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Ovary',
(int) 14 => 'Placenta',
(int) 15 => 'Adipose',
(int) 16 => 'Lung',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Breast',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Kidney',
(int) 54 => 'Ovary',
(int) 55 => 'Testis',
(int) 56 => 'Ovary',
(int) 57 => 'Testis',
(int) 58 => 'Brain',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis'
)
),
'CIL_0007P1_0005' => array(
'genes_in_region' => array(
'ENSG00000214535' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis'
)
),
'CIL_0007P1_0007' => array(
'genes_in_region' => array(
'ENSG00000088930' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Adipose',
(int) 30 => 'Lung',
(int) 31 => 'Placenta',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Breast',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Brain',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis'
)
),
'CIL_0007P1_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000027433' => array(
[maximum depth reached]
),
'ENSMUSG00000074749' => array(
[maximum depth reached]
),
'ENSMUSG00000080870' => array(
[maximum depth reached]
),
'ENSMUSG00000085796' => array(
[maximum depth reached]
),
'ENSMUSG00000087618' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Colon',
(int) 16 => 'Liver',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adrenal',
(int) 35 => 'Colon',
(int) 36 => 'Ovary',
(int) 37 => 'Liver',
(int) 38 => 'Placenta',
(int) 39 => 'Adrenal',
(int) 40 => 'Colon',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adrenal',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Adrenal',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Kidney',
(int) 75 => 'Liver',
(int) 76 => 'Lung',
(int) 77 => 'Muscle',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Testis',
(int) 84 => 'Ovary'
)
),
'CIL_0007P1_0009' => array(
'genes_in_region' => array(
'ENSDARG00000079753' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver'
)
),
'CIL_0007P1_000A' => array(
'genes_in_region' => array(
'ENSDARG00000094359' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0006',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '21195375',
'seq_end' => '21205522',
'region_length' => '10147',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
)
$gene_el = array(
'ENST00000457423' => array(
'Adipose' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.167',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.04'
),
'Breast' => array(
'average_FPKM' => '1.728',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.156',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.158',
'stddev_FPKM' => '0.06'
),
'Kidney' => array(
'average_FPKM' => '0.252',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.259',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.280',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.099',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.854',
'stddev_FPKM' => '0.98'
),
'Placenta' => array(
'average_FPKM' => '0.450',
'stddev_FPKM' => '0.33'
),
'Testis' => array(
'average_FPKM' => '0.313',
'stddev_FPKM' => '0.20'
)
)
)
$gene_key = 'ENSG00000214535'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.167',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.04'
),
'Breast' => array(
'average_FPKM' => '1.728',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.156',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.158',
'stddev_FPKM' => '0.06'
),
'Kidney' => array(
'average_FPKM' => '0.252',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.259',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.280',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.099',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.854',
'stddev_FPKM' => '0.98'
),
'Placenta' => array(
'average_FPKM' => '0.450',
'stddev_FPKM' => '0.33'
),
'Testis' => array(
'average_FPKM' => '0.313',
'stddev_FPKM' => '0.20'
)
)
$tran_key = 'ENST00000457423'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007P1_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000213384' => 'eukaryotic translation initiation factor 4E family member 2 pseudogene 1',
'ENSG00000188559' => 'Ral GTPase activating protein, alpha subunit 2 (catalytic)',
'ENSG00000225803' => 'mitochondrial ribosomal protein S11 pseudogene 1',
'ENSG00000270793' => 'LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene 1',
'ENSG00000278525' => 'Metazoan signal recognition particle RNA',
'ENSG00000088970' => 'kizuna centrosomal protein',
'ENSG00000199509' => 'RNA, 5S ribosomal pseudogene 477',
'ENSG00000225127' => 'long intergenic non-protein coding RNA 237',
'ENSG00000228604' => null,
'ENSG00000232712' => 'KIZ antisense RNA 1',
'ENSG00000234104' => null,
'ENSG00000235065' => 'ribosomal protein L24 pseudogene 2',
'ENSG00000214535' => 'ribosomal protein S15a pseudogene 1',
'ENSG00000088930' => '5'-3' exoribonuclease 2',
'ENSG00000226875' => 'zinc finger protein 877, pseudogene',
'ENSG00000275457' => null,
'ENSMUSG00000027433' => '5'-3' exoribonuclease 2',
'ENSMUSG00000037110' => 'Ral GTPase activating protein, alpha subunit 2 (catalytic)',
'ENSMUSG00000074749' => 'kizuna centrosomal protein',
'ENSMUSG00000080870' => 'predicted gene 14111',
'ENSMUSG00000085796' => 'RIKEN cDNA 4933406D12 gene',
'ENSMUSG00000087618' => 'predicted gene 14114',
'ENSDARG00000079753' => 'kizuna centrosomal protein',
'ENSDARG00000069092' => '5'-3' exoribonuclease 2',
'ENSDARG00000094359' => 'si:ch211-284a16.2',
'ENSDARG00000094689' => 'si:ch211-284a16.3'
),
'gene_name_arr' => array(
'ENSG00000213384' => 'EIF4E2P1',
'ENSG00000188559' => 'RALGAPA2',
'ENSG00000225803' => 'MRPS11P1',
'ENSG00000270793' => 'LLPHP1',
'ENSG00000278525' => 'Metazoa_SRP',
'ENSG00000088970' => 'KIZ',
'ENSG00000199509' => 'RNA5SP477',
'ENSG00000225127' => 'LINC00237',
'ENSG00000228604' => 'RP5-872K7.7',
'ENSG00000232712' => 'KIZ-AS1',
'ENSG00000234104' => 'RP5-1177M21.1',
'ENSG00000235065' => 'RPL24P2',
'ENSG00000214535' => 'RPS15AP1',
'ENSG00000088930' => 'XRN2',
'ENSG00000226875' => 'ZNF877P',
'ENSG00000275457' => 'RP1-198K11.5',
'ENSMUSG00000027433' => 'Xrn2',
'ENSMUSG00000037110' => 'Ralgapa2',
'ENSMUSG00000074749' => 'Kiz',
'ENSMUSG00000080870' => 'Gm14111',
'ENSMUSG00000085796' => '4933406D12Rik',
'ENSMUSG00000087618' => 'Gm14114',
'ENSDARG00000079753' => 'KIZ',
'ENSDARG00000069092' => 'xrn2',
'ENSDARG00000094359' => 'si:ch211-284a16.2',
'ENSDARG00000094689' => 'si:ch211-284a16.3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 54 => 'Brain',
(int) 76 => 'Breast',
(int) 95 => 'Colon',
(int) 114 => 'Heart',
(int) 129 => 'Kidney',
(int) 150 => 'Liver',
(int) 169 => 'Lung',
(int) 184 => 'Muscle',
(int) 200 => 'Ovary',
(int) 225 => 'Placenta',
(int) 245 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 86,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000393781' => array(
'start' => '20659710',
'end' => '20659964',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'EIF4E2P1-001'
),
'ENST00000202677' => array(
'start' => '20392767',
'end' => '20712488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-008'
),
'ENST00000424981' => array(
'start' => '20635351',
'end' => '20640806',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RALGAPA2-005'
),
'ENST00000427175' => array(
'start' => '20470933',
'end' => '20512600',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-007'
),
'ENST00000430436' => array(
'start' => '20389552',
'end' => '20639900',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-002'
),
'ENST00000495793' => array(
'start' => '20598784',
'end' => '20605412',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RALGAPA2-003'
),
'ENST00000620717' => array(
'start' => '20392768',
'end' => '20512658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-201'
),
'ENST00000437558' => array(
'start' => '20854121',
'end' => '20854642',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS11P1-001'
),
'ENST00000603571' => array(
'start' => '20721187',
'end' => '20721879',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LLPHP1-001'
),
'ENST00000461220' => array(
'start' => '20738433',
'end' => '20738731',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-476'
),
'ENST00000419359' => array(
'start' => '21218464',
'end' => '21246620',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-001'
),
'ENST00000423272' => array(
'start' => '21244471',
'end' => '21246618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-006'
),
'ENST00000441136' => array(
'start' => '21226140',
'end' => '21232914',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-005'
),
'ENST00000451772' => array(
'start' => '21218459',
'end' => '21244354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-004'
),
'ENST00000611685' => array(
'start' => '21126039',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-014'
),
'ENST00000612654' => array(
'start' => '21126014',
'end' => '21136449',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KIZ-011'
),
'ENST00000616679' => array(
'start' => '21145586',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-003'
),
'ENST00000616848' => array(
'start' => '21126052',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-013'
),
'ENST00000619179' => array(
'start' => '21145589',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-002'
),
'ENST00000619189' => array(
'start' => '21126054',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-007'
),
'ENST00000619574' => array(
'start' => '21125983',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-201'
),
'ENST00000620553' => array(
'start' => '21126060',
'end' => '21145655',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-010'
),
'ENST00000620891' => array(
'start' => '21126007',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-009'
),
'ENST00000621366' => array(
'start' => '21162083',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-008'
),
'ENST00000622184' => array(
'start' => '21126038',
'end' => '21133179',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-012'
),
'ENST00000362639' => array(
'start' => '21138956',
'end' => '21139074',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP477-201'
),
'ENST00000420705' => array(
'start' => '21093558',
'end' => '21106334',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-002'
),
'ENST00000455890' => array(
'start' => '21092809',
'end' => '21101559',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-003'
),
'ENST00000593272' => array(
'start' => '21087604',
'end' => '21106358',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-004'
),
'ENST00000425746' => array(
'start' => '21151668',
'end' => '21162890',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-872K7.7-001'
),
'ENST00000434043' => array(
'start' => '21148741',
'end' => '21158741',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-872K7.7-002'
),
'ENST00000433213' => array(
'start' => '21197462',
'end' => '21218289',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-003'
),
'ENST00000443753' => array(
'start' => '21194404',
'end' => '21218289',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-001'
),
'ENST00000616177' => array(
'start' => '21154023',
'end' => '21218265',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-002'
),
'ENST00000432942' => array(
'start' => '20970448',
'end' => '20972562',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1177M21.1-001'
),
'ENST00000421023' => array(
'start' => '21114723',
'end' => '21115197',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL24P2-001'
),
'ENST00000457423' => array(
'start' => '21166206',
'end' => '21166596',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS15AP1-001'
),
'ENST00000377191' => array(
'start' => '21303304',
'end' => '21389827',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XRN2-001'
),
'ENST00000437614' => array(
'start' => '21265854',
'end' => '21266465',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'ZNF877P-001'
),
'ENST00000622628' => array(
'start' => '21302731',
'end' => '21303704',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-198K11.5-001'
),
'ENSMUST00000028921' => array(
'start' => '147012996',
'end' => '147078000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xrn2-001'
),
'ENSMUST00000136136' => array(
'start' => '147042546',
'end' => '147047822',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-003'
),
'ENSMUST00000137358' => array(
'start' => '147061440',
'end' => '147068900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-004'
),
'ENSMUST00000147057' => array(
'start' => '147029552',
'end' => '147038287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-002'
),
'ENSMUST00000109982' => array(
'start' => '146420078',
'end' => '146511911',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-003'
),
'ENSMUST00000109986' => array(
'start' => '146239879',
'end' => '146512004',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-001'
),
'ENSMUST00000124583' => array(
'start' => '146244784',
'end' => '146261375',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ralgapa2-002'
),
'ENSMUST00000124709' => array(
'start' => '146484868',
'end' => '146512026',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-009'
),
'ENSMUST00000131824' => array(
'start' => '146248199',
'end' => '146511899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-007'
),
'ENSMUST00000135974' => array(
'start' => '146429452',
'end' => '146512004',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-006'
),
'ENSMUST00000146024' => array(
'start' => '146404835',
'end' => '146412876',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-010'
),
'ENSMUST00000146307' => array(
'start' => '146258564',
'end' => '146387683',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ralgapa2-005'
),
'ENSMUST00000148784' => array(
'start' => '146360686',
'end' => '146406283',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-004'
),
'ENSMUST00000149499' => array(
'start' => '146243976',
'end' => '146447292',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-008'
),
'ENSMUST00000099278' => array(
'start' => '146855864',
'end' => '146970097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kiz-001'
),
'ENSMUST00000135595' => array(
'start' => '146952883',
'end' => '146970092',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Kiz-003'
),
'ENSMUST00000156232' => array(
'start' => '146855909',
'end' => '146889295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kiz-002'
),
'ENSMUST00000119851' => array(
'start' => '146754707',
'end' => '146755705',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14111-001'
),
'ENSMUST00000147212' => array(
'start' => '146542931',
'end' => '146546108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4933406D12Rik-001'
),
'ENSMUST00000139345' => array(
'start' => '146828327',
'end' => '146839732',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14114-001'
),
'ENSDART00000111537' => array(
'start' => '42107843',
'end' => '42160969',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-001'
),
'ENSDART00000147563' => array(
'start' => '42143685',
'end' => '42160858',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-002'
),
'ENSDART00000100239' => array(
'start' => '48986120',
'end' => '49020457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-201'
),
'ENSDART00000100246' => array(
'start' => '48985939',
'end' => '49073598',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-001'
),
'ENSDART00000137314' => array(
'start' => '49007041',
'end' => '49023831',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-003'
),
'ENSDART00000146596' => array(
'start' => '48986041',
'end' => '49073204',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'xrn2-002'
),
'ENSDART00000143470' => array(
'start' => '48996966',
'end' => '48998022',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-284a16.2-001'
),
'ENSDART00000137846' => array(
'start' => '48990498',
'end' => '48991157',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-284a16.3-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007P1_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P1_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007P1_0001' => array(
'genes_in_region' => array(
'ENSG00000213384' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Kidney'
)
),
'CIL_0007P1_0002' => array(
'genes_in_region' => array(
'ENSG00000188559' => array(
[maximum depth reached]
),
'ENSG00000225803' => array(
[maximum depth reached]
),
'ENSG00000278525' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Breast',
(int) 12 => 'Colon',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Bladder',
(int) 22 => 'Adrenal',
(int) 23 => 'Breast',
(int) 24 => 'Testis',
(int) 25 => 'Kidney',
(int) 26 => 'Lung'
)
),
'CIL_0007P1_0004' => array(
'genes_in_region' => array(
'ENSG00000199509' => array(
[maximum depth reached]
),
'ENSG00000225127' => array(
[maximum depth reached]
),
'ENSG00000234104' => array(
[maximum depth reached]
),
'ENSG00000235065' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Ovary',
(int) 14 => 'Placenta',
(int) 15 => 'Adipose',
(int) 16 => 'Lung',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Breast',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Kidney',
(int) 54 => 'Ovary',
(int) 55 => 'Testis',
(int) 56 => 'Ovary',
(int) 57 => 'Testis',
(int) 58 => 'Brain',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis'
)
),
'CIL_0007P1_0005' => array(
'genes_in_region' => array(
'ENSG00000214535' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis'
)
),
'CIL_0007P1_0007' => array(
'genes_in_region' => array(
'ENSG00000088930' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Adipose',
(int) 30 => 'Lung',
(int) 31 => 'Placenta',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Breast',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Brain',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis'
)
),
'CIL_0007P1_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000027433' => array(
[maximum depth reached]
),
'ENSMUSG00000074749' => array(
[maximum depth reached]
),
'ENSMUSG00000080870' => array(
[maximum depth reached]
),
'ENSMUSG00000085796' => array(
[maximum depth reached]
),
'ENSMUSG00000087618' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Colon',
(int) 16 => 'Liver',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adrenal',
(int) 35 => 'Colon',
(int) 36 => 'Ovary',
(int) 37 => 'Liver',
(int) 38 => 'Placenta',
(int) 39 => 'Adrenal',
(int) 40 => 'Colon',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adrenal',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Adrenal',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Kidney',
(int) 75 => 'Liver',
(int) 76 => 'Lung',
(int) 77 => 'Muscle',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Testis',
(int) 84 => 'Ovary'
)
),
'CIL_0007P1_0009' => array(
'genes_in_region' => array(
'ENSDARG00000079753' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver'
)
),
'CIL_0007P1_000A' => array(
'genes_in_region' => array(
'ENSDARG00000094359' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart'
)
)
)
$gene_desc_arr = array(
'ENSG00000213384' => 'eukaryotic translation initiation factor 4E family member 2 pseudogene 1',
'ENSG00000188559' => 'Ral GTPase activating protein, alpha subunit 2 (catalytic)',
'ENSG00000225803' => 'mitochondrial ribosomal protein S11 pseudogene 1',
'ENSG00000270793' => 'LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene 1',
'ENSG00000278525' => 'Metazoan signal recognition particle RNA',
'ENSG00000088970' => 'kizuna centrosomal protein',
'ENSG00000199509' => 'RNA, 5S ribosomal pseudogene 477',
'ENSG00000225127' => 'long intergenic non-protein coding RNA 237',
'ENSG00000228604' => null,
'ENSG00000232712' => 'KIZ antisense RNA 1',
'ENSG00000234104' => null,
'ENSG00000235065' => 'ribosomal protein L24 pseudogene 2',
'ENSG00000214535' => 'ribosomal protein S15a pseudogene 1',
'ENSG00000088930' => '5'-3' exoribonuclease 2',
'ENSG00000226875' => 'zinc finger protein 877, pseudogene',
'ENSG00000275457' => null,
'ENSMUSG00000027433' => '5'-3' exoribonuclease 2',
'ENSMUSG00000037110' => 'Ral GTPase activating protein, alpha subunit 2 (catalytic)',
'ENSMUSG00000074749' => 'kizuna centrosomal protein',
'ENSMUSG00000080870' => 'predicted gene 14111',
'ENSMUSG00000085796' => 'RIKEN cDNA 4933406D12 gene',
'ENSMUSG00000087618' => 'predicted gene 14114',
'ENSDARG00000079753' => 'kizuna centrosomal protein',
'ENSDARG00000069092' => '5'-3' exoribonuclease 2',
'ENSDARG00000094359' => 'si:ch211-284a16.2',
'ENSDARG00000094689' => 'si:ch211-284a16.3'
)
$gene_name_arr = array(
'ENSG00000213384' => 'EIF4E2P1',
'ENSG00000188559' => 'RALGAPA2',
'ENSG00000225803' => 'MRPS11P1',
'ENSG00000270793' => 'LLPHP1',
'ENSG00000278525' => 'Metazoa_SRP',
'ENSG00000088970' => 'KIZ',
'ENSG00000199509' => 'RNA5SP477',
'ENSG00000225127' => 'LINC00237',
'ENSG00000228604' => 'RP5-872K7.7',
'ENSG00000232712' => 'KIZ-AS1',
'ENSG00000234104' => 'RP5-1177M21.1',
'ENSG00000235065' => 'RPL24P2',
'ENSG00000214535' => 'RPS15AP1',
'ENSG00000088930' => 'XRN2',
'ENSG00000226875' => 'ZNF877P',
'ENSG00000275457' => 'RP1-198K11.5',
'ENSMUSG00000027433' => 'Xrn2',
'ENSMUSG00000037110' => 'Ralgapa2',
'ENSMUSG00000074749' => 'Kiz',
'ENSMUSG00000080870' => 'Gm14111',
'ENSMUSG00000085796' => '4933406D12Rik',
'ENSMUSG00000087618' => 'Gm14114',
'ENSDARG00000079753' => 'KIZ',
'ENSDARG00000069092' => 'xrn2',
'ENSDARG00000094359' => 'si:ch211-284a16.2',
'ENSDARG00000094689' => 'si:ch211-284a16.3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0001',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '20492787',
'seq_end' => '20700554',
'region_length' => '207767',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0002',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '20700555',
'seq_end' => '20946612',
'region_length' => '246057',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0003',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '20946613',
'seq_end' => '20956483',
'region_length' => '9870',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0004',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '20956484',
'seq_end' => '21163908',
'region_length' => '207424',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0005',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '21163909',
'seq_end' => '21195374',
'region_length' => '31465',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0006',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '21195375',
'seq_end' => '21205522',
'region_length' => '10147',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0007',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '21205523',
'seq_end' => '21382653',
'region_length' => '177130',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0008',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '146325178',
'seq_end' => '147069451',
'region_length' => '744273',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0009',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '42024663',
'seq_end' => '42207196',
'region_length' => '182533',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_000A',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '48975010',
'seq_end' => '49065915',
'region_length' => '90905',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 54 => 'Brain',
(int) 76 => 'Breast',
(int) 95 => 'Colon',
(int) 114 => 'Heart',
(int) 129 => 'Kidney',
(int) 150 => 'Liver',
(int) 169 => 'Lung',
(int) 184 => 'Muscle',
(int) 200 => 'Ovary',
(int) 225 => 'Placenta',
(int) 245 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 86
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000393781' => array(
'start' => '20659710',
'end' => '20659964',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'EIF4E2P1-001'
),
'ENST00000202677' => array(
'start' => '20392767',
'end' => '20712488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-008'
),
'ENST00000424981' => array(
'start' => '20635351',
'end' => '20640806',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RALGAPA2-005'
),
'ENST00000427175' => array(
'start' => '20470933',
'end' => '20512600',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-007'
),
'ENST00000430436' => array(
'start' => '20389552',
'end' => '20639900',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-002'
),
'ENST00000495793' => array(
'start' => '20598784',
'end' => '20605412',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RALGAPA2-003'
),
'ENST00000620717' => array(
'start' => '20392768',
'end' => '20512658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RALGAPA2-201'
),
'ENST00000437558' => array(
'start' => '20854121',
'end' => '20854642',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS11P1-001'
),
'ENST00000603571' => array(
'start' => '20721187',
'end' => '20721879',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LLPHP1-001'
),
'ENST00000461220' => array(
'start' => '20738433',
'end' => '20738731',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-476'
),
'ENST00000419359' => array(
'start' => '21218464',
'end' => '21246620',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-001'
),
'ENST00000423272' => array(
'start' => '21244471',
'end' => '21246618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-006'
),
'ENST00000441136' => array(
'start' => '21226140',
'end' => '21232914',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-005'
),
'ENST00000451772' => array(
'start' => '21218459',
'end' => '21244354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-004'
),
'ENST00000611685' => array(
'start' => '21126039',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-014'
),
'ENST00000612654' => array(
'start' => '21126014',
'end' => '21136449',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KIZ-011'
),
'ENST00000616679' => array(
'start' => '21145586',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-003'
),
'ENST00000616848' => array(
'start' => '21126052',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-013'
),
'ENST00000619179' => array(
'start' => '21145589',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-002'
),
'ENST00000619189' => array(
'start' => '21126054',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-007'
),
'ENST00000619574' => array(
'start' => '21125983',
'end' => '21246618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-201'
),
'ENST00000620553' => array(
'start' => '21126060',
'end' => '21145655',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-010'
),
'ENST00000620891' => array(
'start' => '21126007',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-009'
),
'ENST00000621366' => array(
'start' => '21162083',
'end' => '21246622',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-008'
),
'ENST00000622184' => array(
'start' => '21126038',
'end' => '21133179',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIZ-012'
),
'ENST00000362639' => array(
'start' => '21138956',
'end' => '21139074',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP477-201'
),
'ENST00000420705' => array(
'start' => '21093558',
'end' => '21106334',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-002'
),
'ENST00000455890' => array(
'start' => '21092809',
'end' => '21101559',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-003'
),
'ENST00000593272' => array(
'start' => '21087604',
'end' => '21106358',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00237-004'
),
'ENST00000425746' => array(
'start' => '21151668',
'end' => '21162890',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-872K7.7-001'
),
'ENST00000434043' => array(
'start' => '21148741',
'end' => '21158741',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-872K7.7-002'
),
'ENST00000433213' => array(
'start' => '21197462',
'end' => '21218289',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-003'
),
'ENST00000443753' => array(
'start' => '21194404',
'end' => '21218289',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-001'
),
'ENST00000616177' => array(
'start' => '21154023',
'end' => '21218265',
'transcript_biotype' => 'antisense',
'transcript_name' => 'KIZ-AS1-002'
),
'ENST00000432942' => array(
'start' => '20970448',
'end' => '20972562',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1177M21.1-001'
),
'ENST00000421023' => array(
'start' => '21114723',
'end' => '21115197',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL24P2-001'
),
'ENST00000457423' => array(
'start' => '21166206',
'end' => '21166596',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS15AP1-001'
),
'ENST00000377191' => array(
'start' => '21303304',
'end' => '21389827',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XRN2-001'
),
'ENST00000437614' => array(
'start' => '21265854',
'end' => '21266465',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'ZNF877P-001'
),
'ENST00000622628' => array(
'start' => '21302731',
'end' => '21303704',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-198K11.5-001'
),
'ENSMUST00000028921' => array(
'start' => '147012996',
'end' => '147078000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xrn2-001'
),
'ENSMUST00000136136' => array(
'start' => '147042546',
'end' => '147047822',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-003'
),
'ENSMUST00000137358' => array(
'start' => '147061440',
'end' => '147068900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-004'
),
'ENSMUST00000147057' => array(
'start' => '147029552',
'end' => '147038287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Xrn2-002'
),
'ENSMUST00000109982' => array(
'start' => '146420078',
'end' => '146511911',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-003'
),
'ENSMUST00000109986' => array(
'start' => '146239879',
'end' => '146512004',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-001'
),
'ENSMUST00000124583' => array(
'start' => '146244784',
'end' => '146261375',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ralgapa2-002'
),
'ENSMUST00000124709' => array(
'start' => '146484868',
'end' => '146512026',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-009'
),
'ENSMUST00000131824' => array(
'start' => '146248199',
'end' => '146511899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-007'
),
'ENSMUST00000135974' => array(
'start' => '146429452',
'end' => '146512004',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-006'
),
'ENSMUST00000146024' => array(
'start' => '146404835',
'end' => '146412876',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-010'
),
'ENSMUST00000146307' => array(
'start' => '146258564',
'end' => '146387683',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ralgapa2-005'
),
'ENSMUST00000148784' => array(
'start' => '146360686',
'end' => '146406283',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ralgapa2-004'
),
'ENSMUST00000149499' => array(
'start' => '146243976',
'end' => '146447292',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ralgapa2-008'
),
'ENSMUST00000099278' => array(
'start' => '146855864',
'end' => '146970097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kiz-001'
),
'ENSMUST00000135595' => array(
'start' => '146952883',
'end' => '146970092',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Kiz-003'
),
'ENSMUST00000156232' => array(
'start' => '146855909',
'end' => '146889295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kiz-002'
),
'ENSMUST00000119851' => array(
'start' => '146754707',
'end' => '146755705',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14111-001'
),
'ENSMUST00000147212' => array(
'start' => '146542931',
'end' => '146546108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4933406D12Rik-001'
),
'ENSMUST00000139345' => array(
'start' => '146828327',
'end' => '146839732',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm14114-001'
),
'ENSDART00000111537' => array(
'start' => '42107843',
'end' => '42160969',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-001'
),
'ENSDART00000147563' => array(
'start' => '42143685',
'end' => '42160858',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIZ-002'
),
'ENSDART00000100239' => array(
'start' => '48986120',
'end' => '49020457',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-201'
),
'ENSDART00000100246' => array(
'start' => '48985939',
'end' => '49073598',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-001'
),
'ENSDART00000137314' => array(
'start' => '49007041',
'end' => '49023831',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'xrn2-003'
),
'ENSDART00000146596' => array(
'start' => '48986041',
'end' => '49073204',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'xrn2-002'
),
'ENSDART00000143470' => array(
'start' => '48996966',
'end' => '48998022',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-284a16.2-001'
),
'ENSDART00000137846' => array(
'start' => '48990498',
'end' => '48991157',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-284a16.3-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007P1_0001' => array(
'genes_in_region' => array(
'ENSG00000213384' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Kidney'
)
),
'CIL_0007P1_0002' => array(
'genes_in_region' => array(
'ENSG00000188559' => array(
[maximum depth reached]
),
'ENSG00000225803' => array(
[maximum depth reached]
),
'ENSG00000278525' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Ovary',
(int) 6 => 'Testis',
(int) 7 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Breast',
(int) 12 => 'Colon',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Bladder',
(int) 22 => 'Adrenal',
(int) 23 => 'Breast',
(int) 24 => 'Testis',
(int) 25 => 'Kidney',
(int) 26 => 'Lung'
)
),
'CIL_0007P1_0004' => array(
'genes_in_region' => array(
'ENSG00000199509' => array(
[maximum depth reached]
),
'ENSG00000225127' => array(
[maximum depth reached]
),
'ENSG00000234104' => array(
[maximum depth reached]
),
'ENSG00000235065' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Ovary',
(int) 14 => 'Placenta',
(int) 15 => 'Adipose',
(int) 16 => 'Lung',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Adrenal',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Breast',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Ovary',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Kidney',
(int) 54 => 'Ovary',
(int) 55 => 'Testis',
(int) 56 => 'Ovary',
(int) 57 => 'Testis',
(int) 58 => 'Brain',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis'
)
),
'CIL_0007P1_0005' => array(
'genes_in_region' => array(
'ENSG00000214535' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis'
)
),
'CIL_0007P1_0007' => array(
'genes_in_region' => array(
'ENSG00000088930' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Ovary',
(int) 28 => 'Placenta',
(int) 29 => 'Adipose',
(int) 30 => 'Lung',
(int) 31 => 'Placenta',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Breast',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Brain',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis'
)
),
'CIL_0007P1_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000027433' => array(
[maximum depth reached]
),
'ENSMUSG00000074749' => array(
[maximum depth reached]
),
'ENSMUSG00000080870' => array(
[maximum depth reached]
),
'ENSMUSG00000085796' => array(
[maximum depth reached]
),
'ENSMUSG00000087618' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Colon',
(int) 16 => 'Liver',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adrenal',
(int) 35 => 'Colon',
(int) 36 => 'Ovary',
(int) 37 => 'Liver',
(int) 38 => 'Placenta',
(int) 39 => 'Adrenal',
(int) 40 => 'Colon',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adrenal',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Adrenal',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Colon',
(int) 73 => 'Heart',
(int) 74 => 'Kidney',
(int) 75 => 'Liver',
(int) 76 => 'Lung',
(int) 77 => 'Muscle',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Bladder',
(int) 82 => 'Brain',
(int) 83 => 'Testis',
(int) 84 => 'Ovary'
)
),
'CIL_0007P1_0009' => array(
'genes_in_region' => array(
'ENSDARG00000079753' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver'
)
),
'CIL_0007P1_000A' => array(
'genes_in_region' => array(
'ENSDARG00000094359' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P1_0006',
'tax_id' => '9606',
'chromosome' => '20',
'seq_start' => '21195375',
'seq_end' => '21205522',
'region_length' => '10147',
'region_type' => 'UCNEbase',
'el_id' => 'PAX1'
)
)
$gene_el = array(
'ENST00000457423' => array(
'Adipose' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.167',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.04'
),
'Breast' => array(
'average_FPKM' => '1.728',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.156',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.158',
'stddev_FPKM' => '0.06'
),
'Kidney' => array(
'average_FPKM' => '0.252',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.259',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.280',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.099',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.854',
'stddev_FPKM' => '0.98'
),
'Placenta' => array(
'average_FPKM' => '0.450',
'stddev_FPKM' => '0.33'
),
'Testis' => array(
'average_FPKM' => '0.313',
'stddev_FPKM' => '0.20'
)
)
)
$gene_key = 'ENSG00000214535'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.167',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.124',
'stddev_FPKM' => '0.04'
),
'Breast' => array(
'average_FPKM' => '1.728',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.156',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.158',
'stddev_FPKM' => '0.06'
),
'Kidney' => array(
'average_FPKM' => '0.252',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.259',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.280',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.099',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.854',
'stddev_FPKM' => '0.98'
),
'Placenta' => array(
'average_FPKM' => '0.450',
'stddev_FPKM' => '0.33'
),
'Testis' => array(
'average_FPKM' => '0.313',
'stddev_FPKM' => '0.20'
)
)
$tran_key = 'ENST00000457423'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| PAX1 |
UCNEbase |
9606 |
20:21195375-21205522  |
| Gene | Transcript | Position | Biotype |
|---|
(EIF4E2P1)