C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5'-3' exoribonuclease 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028921 Xrn2-001 ENSMUSG00000027433 10090 + 2:147012996-147078000 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028921
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028921 7.458±1.98 2.801±0.86 15.858±1.63 15.664±7.48 6.124±1.54 4.581±1.08 3.538±0.48 5.883±0.50 9.748±5.82 7.628±1.32 3.628±0.22 11.268±10.52 18.332±6.88 11.947±1.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P1 CIL_0007P1_0008 UCNEbase 2:146325178-147069451
CIL_00097L CIL_00097L_0002 VISTA 2:146657766-147260813
CIL_0002ZA CIL_0002ZA_0002 CGP 2:146855864-147078000
CIL_0008VN CIL_0008VN_0002 VISTA 2:146880290-147481581
CIL_0003QC CIL_0003QC_0002 CGP 2:147012996-147085445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000738 ISS DNA catabolic process, exonucleolytic
GO:0004534 NAS 5'-3' exoribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005730 ISS nucleolus
GO:0006281 NAS DNA repair
GO:0006310 NAS DNA recombination
GO:0006353 IEA DNA-templated transcription, termination
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007017 TAS microtubule-based process
GO:0007283 IEP spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0008409 ISS 5'-3' exonuclease activity
GO:0016020 IEA membrane
GO:0016049 IGI cell growth
GO:0016070 IGI RNA metabolic process
GO:0016235 IEA aggresome
GO:0044822 IEA poly(A) RNA binding
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377191 XRN2-001 protein_coding Homo_sapiens 0 4418

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