C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007RV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm890 VISTA 9606 1:118706148-119314384
GeneTranscriptPositionBiotype
ENSG00000092607 (TBX15)
T-box 15 		ENST00000207157 (TBX15-001) 118883046-118989556 protein_coding
ENST00000369429 (TBX15-002) 118883047-118987805 protein_coding
ENST00000449873 (TBX15-003) 118883047-118914125 protein_coding
ENSG00000116874 (WARS2)
tryptophanyl tRNA synthetase 2, mitochondrial 		ENST00000235521 (WARS2-001) 119031221-119140671 protein_coding
ENST00000369426 (WARS2-002) 119031216-119140648 protein_coding
ENST00000495746 (WARS2-005) 119033297-119140654 processed_transcript
ENST00000497402 (WARS2-004) 119034129-119082541 processed_transcript
ENST00000497761 (WARS2-003) 119139648-119140638 processed_transcript
ENSG00000223575 (RBMX2P3)
RNA binding motif protein, X-linked 2 pseudogene 3 		ENST00000450122 (RBMX2P3-001) 119084998-119085954 processed_pseudogene
ENSG00000224238 (WARS2-IT1)
WARS2 intronic transcript 1 (non-protein coding) 		ENST00000423984 (WARS2-IT1-001) 119047405-119064785 antisense
ENSG00000226172 (RP4-712E4.1)
 ENST00000439394 (RP4-712E4.1-001) 119000344-119001392 lincRNA
ENSG00000227056 (RPL6P2)
ribosomal protein L6 pseudogene 2 		ENST00000425480 (RPL6P2-001) 119219314-119220096 processed_pseudogene
ENSG00000227712 (RP11-418J17.3)
 ENST00000457719 (RP11-418J17.3-001) 119260265-119327303 lincRNA
ENSG00000236804 (RPS3AP12)
ribosomal protein S3a pseudogene 12 		ENST00000443616 (RPS3AP12-001) 119126539-119127291 processed_pseudogene
ENSG00000239216 (RP4-712E4.2)
 ENST00000449439 (RP4-712E4.2-001) 119000618-119001405 lincRNA
CIL_0007RV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm890 VISTA 10090 3:98932927-99536556
GeneTranscriptPositionBiotype
ENSMUSG00000004233 (Wars2)
tryptophanyl tRNA synthetase 2 (mitochondrial) 		ENSMUST00000004343 (Wars2-001) 99141068-99220203 protein_coding
ENSMUST00000126875 (Wars2-004) 99141165-99205527 processed_transcript
ENSMUST00000135960 (Wars2-002) 99141072-99219203 processed_transcript
ENSMUST00000145650 (Wars2-003) 99141093-99239186 processed_transcript
ENSMUSG00000027868 (Tbx15)
T-box 15 		ENSMUST00000029462 (Tbx15-001) 99253760-99354259 protein_coding
ENSMUST00000150756 (Tbx15-003) 99296510-99316240 processed_transcript
ENSMUST00000151606 (Tbx15-002) 99240381-99313065 processed_transcript
ENSMUSG00000065709 (Gm22341)
predicted gene, 22341 		ENSMUST00000083775 (Gm22341-201) 99113155-99113283 snoRNA
ENSMUSG00000080832 (M6pr-ps)
mannose-6-phosphate receptor, pseudogene 		ENSMUST00000120481 (M6pr-ps-001) 99500550-99501379 processed_pseudogene
ENSMUSG00000085121 (5730437C11Rik)
RIKEN cDNA 5730437C11 gene 		ENSMUST00000155540 (5730437C11Rik-001) 98935644-98941256 lincRNA
ENSMUSG00000086833 (Gm12440)
predicted gene 12440 		ENSMUST00000155224 (Gm12440-001) 99049822-99053742 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007RV_0001ENSG00000092607ENST00000207157ENST00000369429ENST00000449873ENSG00000116874ENST00000235521ENST00000369426ENST00000495746ENST00000497402ENST00000497761ENSG00000223575ENST00000450122ENSG00000224238ENST00000423984ENSG00000226172ENST00000439394ENSG00000227056ENST00000425480ENSG00000227712ENST00000457719ENSG00000236804ENST00000443616ENSG00000239216ENST00000449439CIL_0007RV_0002ENSMUSG00000004233ENSMUST00000004343ENSMUST00000126875ENSMUST00000135960ENSMUST00000145650ENSMUSG00000027868ENSMUST00000029462ENSMUST00000150756ENSMUST00000151606ENSMUSG00000065709ENSMUST00000083775ENSMUSG00000080832ENSMUST00000120481ENSMUSG00000085121ENSMUST00000155540ENSMUSG00000086833ENSMUST00000155224
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007RV_0001ENSG00000092607ENST00000207157ENST00000369429ENST00000449873ENSG00000116874ENST00000235521ENST00000369426ENST00000497761ENSG00000223575ENST00000450122ENSG00000224238ENST00000423984ENSG00000226172ENST00000439394ENSG00000227056ENST00000425480ENSG00000227712ENST00000457719ENSG00000236804ENST00000443616ENSG00000239216ENST00000449439CIL_0007RV_0002ENSMUSG00000004233ENSMUST00000004343ENSMUST00000135960ENSMUSG00000027868ENSMUST00000029462ENSMUST00000150756ENSMUST00000151606ENSMUSG00000065709ENSMUST00000083775ENSMUSG00000080832ENSMUST00000120481ENSMUSG00000085121ENSMUST00000155540ENSMUSG00000086833ENSMUST00000155224
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092607 ENST00000207157 N/A N/A N/A 0.219±0.07 N/A N/A N/A N/A N/A N/A N/A 0.090±0.05 N/A 0.274±0.00
ENST00000369429 7.778±0.00 0.556±0.00 N/A 0.189±0.00 8.173±0.00 0.421±0.00 0.236±0.18 0.098±0.00 0.346±0.00 N/A 26.432±13.94 0.044±0.00 0.452±0.00 0.866±0.00
ENST00000449873 3.680±0.00 N/A 0.072±0.00 N/A N/A N/A 0.211±0.00 N/A 1.032±0.71 0.167±0.03 N/A 0.086±0.01 0.079±0.03 0.190±0.00
ENSG00000116874 ENST00000235521 3.195±0.00 1.318±0.00 1.548±0.00 1.632±0.14 2.352±1.00 1.927±0.13 1.417±0.81 2.462±1.46 2.126±0.14 2.067±0.18 1.916±0.00 2.791±1.03 3.087±0.57 2.359±0.09
ENST00000369426 N/A 0.882±0.00 N/A N/A N/A 1.342±0.00 N/A N/A N/A N/A 1.496±0.00 0.996±0.00 0.792±0.00 N/A
ENST00000495746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497761 N/A N/A N/A 2.894±0.00 3.617±0.00 5.130±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223575 ENST00000450122 0.032±0.00 N/A 0.083±0.00 0.036±0.00 0.020±0.00 0.128±0.03 0.017±0.00 N/A N/A 0.377±0.00 N/A 0.157±0.03 0.206±0.00 0.043±0.00
ENSG00000224238 ENST00000423984 0.400±0.00 1.011±0.00 0.140±0.00 0.492±0.46 0.887±0.00 0.273±0.10 0.321±0.23 0.738±0.00 0.153±0.00 0.209±0.16 0.244±0.00 0.563±0.27 0.428±0.35 1.354±0.41
ENSG00000226172 ENST00000439394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A 1.308±0.93
ENSG00000227056 ENST00000425480 N/A 0.036±0.00 1.212±0.00 N/A 0.292±0.00 0.092±0.04 0.054±0.03 0.433±0.00 0.544±0.00 0.025±0.01 0.031±0.00 0.133±0.11 N/A 0.040±0.01
ENSG00000227712 ENST00000457719 N/A 0.104±0.00 N/A 0.087±0.00 0.052±0.00 N/A N/A 0.668±0.00 0.161±0.00 N/A N/A N/A N/A N/A
ENSG00000236804 ENST00000443616 0.045±0.00 0.155±0.00 0.693±0.00 0.060±0.00 0.262±0.25 0.234±0.16 0.108±0.05 0.030±0.00 0.121±0.07 0.099±0.00 N/A 0.028±0.01 N/A 0.063±0.02
ENSG00000239216 ENST00000449439 0.249±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.879±1.62
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004233 ENSMUST00000004343 1.740±0.31 1.321±0.37 0.725±0.04 0.483±0.28 1.513±0.18 1.170±0.32 0.802±0.20 1.968±0.18 0.722±0.18 0.809±0.38 0.472±0.15 1.806±0.83 0.589±0.17 0.258±0.13
ENSMUST00000126875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135960 0.381±0.00 0.524±0.20 1.011±0.00 0.799±0.19 0.363±0.00 0.481±0.08 0.375±0.14 0.647±0.09 0.616±0.26 0.711±0.38 0.547±0.15 1.313±0.48 0.767±0.52 0.269±0.05
ENSMUST00000145650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027868 ENSMUST00000029462 0.026±0.00 0.096±0.05 N/A 0.545±0.32 9.047±4.78 0.040±0.02 0.060±0.00 0.187±0.16 0.044±0.07 0.923±0.87 56.390±4.30 0.078±0.04 0.076±0.04 N/A
ENSMUST00000150756 0.034±0.00 N/A N/A N/A N/A 0.275±0.00 N/A N/A 0.023±0.00 N/A N/A 0.330±0.13 N/A N/A
ENSMUST00000151606 0.122±0.00 0.165±0.07 N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A 0.385±0.01 N/A N/A
ENSMUSG00000065709 ENSMUST00000083775 N/A N/A N/A N/A N/A N/A N/A 759.590±0.00 N/A 1312.660±0.00 N/A 2005.760±0.00 N/A N/A
ENSMUSG00000080832 ENSMUST00000120481 0.050±0.00 N/A N/A 0.077±0.00 N/A N/A 0.047±0.00 0.079±0.03 0.081±0.07 0.105±0.02 N/A 0.217±0.00 0.007±0.00 0.067±0.03
ENSMUSG00000085121 ENSMUST00000155540 N/A 0.423±0.00 N/A 0.118±0.00 N/A 0.973±0.26 N/A 1.369±0.61 0.091±0.00 N/A N/A 0.282±0.00 N/A N/A
ENSMUSG00000086833 ENSMUST00000155224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.091±1.38

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