C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain only 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121796 Lmo4-002 ENSMUSG00000028266 10090 - 3:144188530-144202317 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121796 48.538±22.92 46.103±9.65 57.334±0.00 16.284±8.05 35.879±5.57 13.500±3.35 12.799±2.44 40.969±4.19 6.121±1.39 30.711±5.64 3.325±1.92 24.258±6.42 4.531±1.97 4.126±1.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N8 CIL_0007N8_0002 UCNEbase 3:143101318-144382743
CIL_0007QF CIL_0007QF_0002 VISTA 3:143613930-144215288
CIL_00094A CIL_00094A_0002 VISTA 3:143646946-144248485
CIL_00093Y CIL_00093Y_0002 VISTA 3:143682651-144283371
CIL_0007XS CIL_0007XS_0002 VISTA 3:143685055-144286394
CIL_0008DM CIL_0008DM_0002 VISTA 3:143873688-144475123
CIL_00093Z CIL_00093Z_0002 VISTA 3:143873814-144474949
CIL_0008FW CIL_0008FW_0002 VISTA 3:143894509-144496427
CIL_0008P2 CIL_0008P2_0002 VISTA 3:143903013-144504545
CIL_0000F7 CIL_0000F7_0002 CGP 3:144188530-144570181

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001158 IDA enhancer sequence-specific DNA binding
GO:0001843 IMP neural tube closure
GO:0003281 IMP ventricular septum development
GO:0005515 IPI protein binding
GO:0005667 IDA transcription factor complex
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008134 IDA transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0021514 IDA ventral spinal cord interneuron differentiation
GO:0021522 IDA spinal cord motor neuron differentiation
GO:0021527 IGI spinal cord association neuron differentiation
GO:0031333 IDA negative regulation of protein complex assembly
GO:0042659 IMP regulation of cell fate specification
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048538 IGI thymus development
GO:0050865 IMP regulation of cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148748 lmo4b-002 protein_coding Danio_rerio 0 442
ENSDART00000076997 lmo4b-001 protein_coding Danio_rerio 0 442
ENSDART00000085219 lmo4a-001 protein_coding Danio_rerio 0 241
ENSDART00000145020 lmo4a-003 processed_transcript Danio_rerio 1e-22 111
ENSDART00000142875 lmo4a-002 processed_transcript Danio_rerio 2e-21 108
ENST00000370542 LMO4-002 protein_coding Homo_sapiens 0 1604
ENST00000370544 LMO4-001 protein_coding Homo_sapiens 0 1727
ENST00000489303 LMO4-004 processed_transcript Homo_sapiens 0 1070
ENST00000495705 LMO4-003 processed_transcript Homo_sapiens 0 531

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