C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008HY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2324 VISTA 9606 14:53652860-54253781
GeneTranscriptPositionBiotype
ENSG00000125378 (BMP4)
bone morphogenetic protein 4 		ENST00000245451 (BMP4-001) 53949736-53956811 protein_coding
ENST00000417573 (BMP4-201) 53949739-53954552 protein_coding
ENST00000558489 (BMP4-005) 53955466-53956648 processed_transcript
ENST00000558961 (BMP4-007) 53950622-53952147 protein_coding
ENST00000558984 (BMP4-003) 53949741-53953455 protein_coding
ENST00000559087 (BMP4-002) 53949736-53956811 protein_coding
ENST00000559501 (BMP4-006) 53950255-53953429 protein_coding
ENST00000559642 (BMP4-004) 53951892-53958761 protein_coding
ENST00000609748 (BMP4-008) 53951423-53951880 protein_coding
ENSG00000224004 (ATP5C1P1)
ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene 1 		ENST00000441945 (ATP5C1P1-001) 53991101-53991995 processed_pseudogene
ENSG00000231922 (AL138479.3)
 ENST00000426913 (AL138479.3-001) 53917270-53917753 processed_pseudogene
ENSG00000235269 (AL162759.1)
 ENST00000418927 (AL162759.1-001) 53768942-53850882 lincRNA
ENSG00000237356 (AL163953.3)
 ENST00000425648 (AL163953.3-002) 53369381-53526242 lincRNA
ENST00000435322 (AL163953.3-003) 53217891-53369501 lincRNA
ENST00000454942 (AL163953.3-004) 53169054-53326711 lincRNA
ENST00000456100 (AL163953.3-001) 53217712-53687258 lincRNA
ENST00000612453 (AL163953.3-005) 53590943-53591374 sense_intronic
CIL_0008HY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2324 VISTA 10090 14:46086734-46687665
GeneTranscriptPositionBiotype
ENSMUSG00000021835 (Bmp4)
bone morphogenetic protein 4 		ENSMUST00000074077 (Bmp4-001) 46383520-46390669 protein_coding
ENSMUST00000100676 (Bmp4-002) 46383707-46390550 protein_coding
ENSMUST00000135408 (Bmp4-003) 46386996-46390535 retained_intron
ENSMUSG00000079261 (Gm15217)
predicted gene 15217 		ENSMUST00000111826 (Gm15217-001) 46379467-46383608 protein_coding
ENSMUST00000141358 (Gm15217-002) 46379414-46383418 processed_transcript
ENSMUST00000147092 (Gm15217-003) 46381127-46383368 processed_transcript
ENSMUSG00000085123 (Gm15219)
RNA upstream of Bmp4 expressed in inner ear 		ENSMUST00000151828 (Gm15219-001) 46570213-46575847 lincRNA
ENSMUSG00000085380 (E130120K24Rik)
RIKEN cDNA E130120K24 gene 		ENSMUST00000129910 (E130120K24Rik-001) 46556303-46568344 lincRNA
ENSMUSG00000086168 (Gm15221)
predicted gene 15221 		ENSMUST00000144439 (Gm15221-001) 46436855-46454535 lincRNA
ENSMUSG00000086746 (Gm15222)
predicted gene 15222 		ENSMUST00000127359 (Gm15222-001) 46387519-46389282 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008HY_0001ENSG00000125378ENST00000245451ENST00000417573ENST00000558489ENST00000558961ENST00000558984ENST00000559087ENST00000559501ENST00000559642ENST00000609748ENSG00000224004ENST00000441945ENSG00000231922ENST00000426913ENSG00000235269ENST00000418927ENSG00000237356ENST00000425648ENST00000435322ENST00000454942ENST00000456100ENST00000612453CIL_0008HY_0002ENSMUSG00000021835ENSMUST00000074077ENSMUST00000100676ENSMUST00000135408ENSMUSG00000079261ENSMUST00000111826ENSMUST00000141358ENSMUST00000147092ENSMUSG00000085123ENSMUST00000151828ENSMUSG00000085380ENSMUST00000129910ENSMUSG00000086168ENSMUST00000144439ENSMUSG00000086746ENSMUST00000127359
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008HY_0001ENSG00000125378ENST00000245451ENST00000417573ENST00000558489ENST00000558961ENST00000558984ENST00000559087ENST00000559501ENST00000559642ENSG00000224004ENST00000441945ENSG00000231922ENST00000426913ENSG00000235269ENST00000418927ENSG00000237356ENST00000425648ENST00000435322ENST00000454942ENST00000456100ENST00000612453CIL_0008HY_0002ENSMUSG00000021835ENSMUST00000074077ENSMUST00000100676ENSMUST00000135408ENSMUSG00000079261ENSMUST00000111826ENSMUSG00000085123ENSMUST00000151828ENSMUSG00000085380ENSMUST00000129910ENSMUSG00000086168ENSMUST00000144439ENSMUSG00000086746ENSMUST00000127359
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125378 ENST00000245451 2.315±0.00 2.019±0.00 N/A N/A 3.203±0.00 8.829±0.00 N/A 2.414±0.00 0.609±0.00 6.745±0.00 N/A 1.672±0.57 6.014±2.69 2.307±0.00
ENST00000417573 N/A 0.731±0.00 N/A N/A 1.189±0.00 N/A N/A 1.067±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.613±0.00 N/A N/A
ENST00000558961 N/A 4.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.218±0.00 N/A N/A
ENST00000558984 0.667±0.00 1.793±0.00 1.590±0.00 0.761±0.00 2.741±0.00 3.251±0.00 0.784±0.00 0.683±0.00 2.444±0.00 1.324±0.00 1.823±0.00 N/A N/A N/A
ENST00000559087 1.105±0.00 N/A N/A 0.179±0.00 N/A 3.732±0.00 0.948±0.00 2.200±0.00 N/A N/A 0.379±0.00 4.338±0.00 N/A 1.714±0.00
ENST00000559501 N/A N/A N/A N/A N/A N/A 1.059±0.00 N/A N/A 0.563±0.00 2.399±0.00 4.065±3.28 9.756±0.00 0.933±0.00
ENST00000559642 N/A N/A N/A N/A N/A N/A 0.376±0.00 N/A 4.350±0.00 1.149±0.00 N/A N/A N/A N/A
ENST00000609748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224004 ENST00000441945 N/A 0.029±0.00 N/A 0.015±0.00 0.029±0.00 0.027±0.00 N/A 0.117±0.00 0.013±0.00 N/A 0.025±0.00 N/A N/A 0.086±0.06
ENSG00000231922 ENST00000426913 N/A N/A N/A 0.067±0.00 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235269 ENST00000418927 N/A N/A 0.383±0.00 N/A N/A 0.082±0.00 N/A N/A 0.090±0.00 N/A N/A 0.212±0.00 0.070±0.00 N/A
ENSG00000237356 ENST00000425648 N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A 0.157±0.00 N/A 0.070±0.00 0.096±0.00 N/A
ENST00000435322 N/A N/A N/A 0.063±0.00 N/A N/A 0.046±0.00 N/A N/A N/A N/A 0.321±0.00 0.127±0.00 N/A
ENST00000454942 N/A 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.242±0.00 0.238±0.00
ENST00000456100 N/A N/A N/A 0.270±0.00 0.051±0.00 0.821±0.22 0.145±0.00 0.234±0.00 N/A 0.221±0.13 N/A 0.892±0.18 0.125±0.00 0.840±0.51
ENST00000612453 0.085±0.00 0.088±0.00 N/A N/A N/A 0.347±0.00 N/A N/A N/A 0.231±0.00 N/A 0.143±0.00 N/A 0.143±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021835 ENSMUST00000074077 3.015±2.04 2.309±0.67 13.396±0.51 0.433±0.36 1.023±0.23 19.281±2.23 1.750±0.42 6.720±2.42 0.511±0.21 18.108±4.00 0.489±0.18 2.581±0.96 1.303±0.63 0.193±0.08
ENSMUST00000100676 2.078±0.40 1.760±0.23 9.681±2.82 0.286±0.11 1.269±0.48 9.900±2.73 1.155±0.15 7.908±2.43 0.490±0.33 6.753±0.45 1.061±0.15 2.388±0.83 3.328±3.40 0.268±0.10
ENSMUST00000135408 N/A N/A N/A N/A 1.429±0.00 N/A N/A N/A 0.548±0.07 N/A N/A N/A N/A N/A
ENSMUSG00000079261 ENSMUST00000111826 N/A N/A N/A N/A N/A N/A N/A 12.354±3.72 N/A N/A N/A N/A N/A N/A
ENSMUST00000141358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085123 ENSMUST00000151828 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A 0.095±0.02 N/A N/A 0.424±0.16 0.601±0.61 1.052±0.00
ENSMUSG00000085380 ENSMUST00000129910 N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A 0.108±0.00 N/A N/A N/A 0.043±0.03 0.068±0.00
ENSMUSG00000086168 ENSMUST00000144439 N/A N/A 0.080±0.02 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 0.198±0.00 0.148±0.00
ENSMUSG00000086746 ENSMUST00000127359 0.818±0.39 0.411±0.21 2.730±0.00 0.271±0.00 N/A 0.276±0.00 N/A 1.845±0.49 0.232±0.09 1.301±0.26 0.337±0.11 0.651±0.27 1.302±0.75 0.383±0.21

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