C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416838 HNRNPA3P3-001 ENSG00000214653 9606 + X:140032344-140033480 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000416838
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000416838 0.149±0.00 0.076±0.00 0.078±0.00 0.042±0.00 0.078±0.00 0.054±0.00 0.020±0.00 0.020±0.00 0.040±0.03 0.102±0.00 0.141±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008B4 CIL_0008B4_0001 VISTA X:139787220-140389386
CIL_0008R8 CIL_0008R8_0001 VISTA X:139949968-140551211
CIL_0001AO CIL_0001AO_0001 CGP X:139955725-140505503
CIL_0008YR CIL_0008YR_0001 VISTA X:139998751-140600034

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090792 Hnrnpa3-201 protein_coding Mus_musculus 0 1572
ENSMUST00000111964 Hnrnpa3-002 protein_coding Mus_musculus 0 1572
ENSMUST00000117582 Gm5940-001 processed_pseudogene Mus_musculus 0 1498
ENSMUST00000091130 Gm5641-201 protein_coding Mus_musculus 0 1495
ENSMUST00000164947 Hnrnpa3-202 protein_coding Mus_musculus 0 1495
ENSMUST00000111962 Hnrnpa3-001 protein_coding Mus_musculus 0 1495
ENSMUST00000121942 Gm6161-001 processed_pseudogene Mus_musculus 0 1489
ENSMUST00000177820 Gm9242-201 protein_coding Mus_musculus 0 1489
ENSMUST00000168178 Gm6254-001 processed_pseudogene Mus_musculus 0 1476
ENSMUST00000161973 Gm6397-001 processed_pseudogene Mus_musculus 0 1471
ENSMUST00000120017 Gm12960-001 processed_pseudogene Mus_musculus 0 1467
ENSMUST00000125165 Gm11847-001 processed_pseudogene Mus_musculus 0 1458
ENSMUST00000119652 Gm11991-001 processed_pseudogene Mus_musculus 0 1439
ENSMUST00000117287 Gm14398-001 processed_pseudogene Mus_musculus 0 1423
ENSMUST00000071732 Gm6793-201 protein_coding Mus_musculus 0 1389
ENSMUST00000172004 Gm6153-001 processed_pseudogene Mus_musculus 0 1343
ENSMUST00000119643 Gm6758-001 processed_pseudogene Mus_musculus 0 1332
ENSMUST00000119775 Gm6506-001 processed_pseudogene Mus_musculus 0 1325
ENSMUST00000122378 Gm14730-001 processed_pseudogene Mus_musculus 0 1319
ENSMUST00000119765 Gm9431-001 processed_pseudogene Mus_musculus 0 1271
ENSMUST00000120104 Gm12129-001 processed_pseudogene Mus_musculus 0 1249
ENSMUST00000032395 Gm7399-001 processed_pseudogene Mus_musculus 0 1155
ENSMUST00000089593 Gm7551-201 processed_pseudogene Mus_musculus 0 1116
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 1088
ENSMUST00000191574 RP24-177N20.1-001 processed_pseudogene Mus_musculus 0 1062
ENSMUST00000111961 Hnrnpa3-003 protein_coding Mus_musculus 0 1031
ENSMUST00000120507 Gm12961-001 processed_pseudogene Mus_musculus 0 1009
ENSMUST00000185178 Gm17190-002 protein_coding Mus_musculus 0 968
ENSMUST00000073014 Gm8991-201 protein_coding Mus_musculus 0 887
ENSMUST00000184369 Gm17190-001 translated_processed_pseudogene Mus_musculus 0 885
ENSMUST00000141974 Hnrnpa3-004 protein_coding Mus_musculus 0 806
ENSMUST00000121434 Gm14052-001 processed_pseudogene Mus_musculus 0 776
ENSMUST00000117756 Gm12194-001 processed_pseudogene Mus_musculus 0 773
ENSMUST00000189662 RP23-472J11.2-001 processed_pseudogene Mus_musculus 0 767
ENSMUST00000119037 Gm12986-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000119442 Gm13369-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000120487 Gm12229-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000121177 Gm5383-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000132392 Hnrnpa3-005 retained_intron Mus_musculus 0 442
ENSMUST00000163579 Gm9064-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000118087 Gm13351-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 331

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