C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403835 NPM1P38-001 ENSG00000219257 9606 - 6:100050372-100051236 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLungMuscleTestisENST00000403835
Transcript ID Adrenal Colon Lung Muscle Testis
ENST00000403835 0.038±0.00 0.035±0.00 0.012±0.00 0.011±0.00 0.150±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NG CIL_0007NG_0001 UCNEbase 6:99749802-100612540
CIL_0008SA CIL_0008SA_0001 VISTA 6:99910036-100511515

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 693
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 608
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 575
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 575
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 497
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 2e-39 167

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