C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008V7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs354 VISTA 9606 15:35326518-35927420
GeneTranscriptPositionBiotype
ENSG00000134146 (DPH6)
diphthamine biosynthesis 6 		ENST00000256538 (DPH6-001) 35370882-35546168 protein_coding
ENST00000440392 (DPH6-002) 35518994-35546192 protein_coding
ENST00000558266 (DPH6-009) 35372107-35454760 protein_coding
ENST00000558973 (DPH6-008) 35330801-35410858 processed_transcript
ENST00000559585 (DPH6-007) 35489969-35546153 processed_transcript
ENST00000559784 (DPH6-006) 35381835-35542491 processed_transcript
ENST00000560386 (DPH6-003) 35217345-35410851 processed_transcript
ENST00000560526 (DPH6-005) 35538082-35546193 retained_intron
ENST00000561411 (DPH6-004) 35381832-35546165 protein_coding
ENSG00000248079 (DPH6-AS1)
DPH6 antisense RNA 1 (head to head) 		ENST00000501169 (DPH6-AS1-001) 35546195-35859001 lincRNA
ENST00000559210 (DPH6-AS1-003) 35546383-35858303 lincRNA
ENST00000560866 (DPH6-AS1-002) 35856477-35858302 lincRNA
ENSG00000259411 (HNRNPA1P45)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 45 		ENST00000560893 (HNRNPA1P45-001) 35400691-35401768 processed_pseudogene
ENSG00000259688 (RP11-139F4.2)
 ENST00000557918 (RP11-139F4.2-001) 35396221-35396444 processed_pseudogene
ENSG00000265102 (MIR3942)
microRNA 3942 		ENST00000585264 (MIR3942-201) 35372256-35372364 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008V7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs354 VISTA 10090 2:114439395-115040295
GeneTranscriptPositionBiotype
ENSMUSG00000057147 (Dph6)
diphthamine biosynthesis 6 		ENSMUST00000028640 (Dph6-002) 114516416-114654953 protein_coding
ENSMUST00000055144 (Dph6-003) 114516644-114654887 protein_coding
ENSMUST00000102542 (Dph6-001) 114516420-114654964 protein_coding
ENSMUST00000138106 (Dph6-006) 114518145-114545891 processed_transcript
ENSMUST00000138975 (Dph6-005) 114642075-114654905 retained_intron
ENSMUST00000150447 (Dph6-004) 114521227-114654964 retained_intron
ENSMUSG00000084222 (Gm13973)
predicted gene 13973 		ENSMUST00000121371 (Gm13973-001) 115036419-115037312 processed_pseudogene
ENSMUSG00000084785 (Gm13972)
predicted gene 13972 		ENSMUST00000153726 (Gm13972-001) 114654425-114697839 processed_transcript
ENSMUSG00000085222 (Gm13974)
predicted gene 13974 		ENSMUST00000144368 (Gm13974-001) 114854093-115043972 lincRNA
ENSMUSG00000099361 (RP23-142N2.3)
predicted gene 28492 		ENSMUST00000190899 (RP23-142N2.3-001) 114938570-114939588 sense_intronic

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008V7_0001ENSG00000134146ENST00000256538ENST00000440392ENST00000558266ENST00000558973ENST00000559585ENST00000559784ENST00000560386ENST00000560526ENST00000561411ENSG00000248079ENST00000501169ENST00000559210ENST00000560866ENSG00000259411ENST00000560893ENSG00000259688ENST00000557918ENSG00000265102ENST00000585264CIL_0008V7_0002ENSMUSG00000057147ENSMUST00000028640ENSMUST00000055144ENSMUST00000102542ENSMUST00000138106ENSMUST00000138975ENSMUST00000150447ENSMUSG00000084222ENSMUST00000121371ENSMUSG00000084785ENSMUST00000153726ENSMUSG00000085222ENSMUST00000144368ENSMUSG00000099361ENSMUST00000190899
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008V7_0001ENSG00000134146ENST00000256538ENST00000440392ENST00000558266ENST00000559585ENST00000559784ENST00000560386ENST00000560526ENST00000561411ENSG00000248079ENST00000501169ENST00000559210ENST00000560866ENSG00000259411ENST00000560893ENSG00000259688ENST00000557918ENSG00000265102ENST00000585264CIL_0008V7_0002ENSMUSG00000057147ENSMUST00000028640ENSMUST00000055144ENSMUST00000102542ENSMUST00000138106ENSMUST00000150447ENSMUSG00000084222ENSMUST00000121371ENSMUSG00000084785ENSMUST00000153726ENSMUSG00000085222ENSMUST00000144368ENSMUSG00000099361ENSMUST00000190899
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134146 ENST00000256538 0.977±0.00 1.041±0.00 N/A 0.279±0.00 0.612±0.00 1.106±0.12 1.110±0.45 0.900±0.62 0.196±0.00 0.860±0.00 0.382±0.11 1.841±0.89 1.165±0.26 1.172±0.71
ENST00000440392 N/A 0.163±0.00 N/A N/A 0.133±0.00 0.660±0.00 0.370±0.00 N/A 0.070±0.00 0.377±0.00 N/A N/A 0.118±0.00 N/A
ENST00000558266 N/A N/A N/A N/A N/A N/A N/A 1.651±0.87 0.765±0.00 1.518±0.00 2.099±0.00 N/A 1.220±0.28 N/A
ENST00000558973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559585 N/A N/A N/A 2.900±0.00 N/A N/A N/A N/A N/A N/A 2.038±0.00 N/A N/A 0.940±0.00
ENST00000559784 4.017±0.00 N/A N/A N/A N/A N/A N/A N/A 1.197±0.00 N/A N/A 0.672±0.00 0.760±0.00 N/A
ENST00000560386 N/A 0.233±0.00 N/A 0.226±0.05 0.449±0.00 0.164±0.00 N/A 0.194±0.02 N/A 0.924±0.00 N/A N/A N/A 0.208±0.00
ENST00000560526 N/A N/A N/A N/A N/A 2.921±0.00 4.356±0.00 0.601±0.00 3.118±0.00 N/A 1.390±0.00 N/A N/A N/A
ENST00000561411 2.592±0.00 1.241±0.00 3.347±0.00 2.601±0.29 2.723±0.00 5.916±0.00 3.016±0.00 1.773±0.65 N/A 3.889±0.00 1.360±0.00 7.256±4.61 1.948±0.85 2.437±1.07
ENSG00000248079 ENST00000501169 0.031±0.00 0.053±0.00 0.410±0.00 0.314±0.05 N/A 0.032±0.01 0.417±0.00 0.402±0.00 0.049±0.00 0.130±0.09 N/A 0.192±0.10 0.095±0.07 0.048±0.01
ENST00000559210 N/A N/A N/A N/A N/A 0.335±0.00 0.476±0.00 N/A N/A 0.360±0.00 0.024±0.00 0.513±0.00 N/A N/A
ENST00000560866 N/A N/A 1.577±0.00 0.632±0.03 N/A N/A N/A N/A 0.138±0.00 N/A N/A 0.397±0.00 N/A 0.144±0.03
ENSG00000259411 ENST00000560893 N/A 0.013±0.00 0.132±0.00 0.124±0.00 0.094±0.07 0.139±0.11 0.059±0.02 0.013±0.00 0.188±0.00 0.076±0.05 0.012±0.00 0.027±0.00 N/A 0.012±0.00
ENSG00000259688 ENST00000557918 N/A N/A 1.247±0.00 N/A 0.261±0.00 N/A N/A N/A N/A N/A N/A 1.579±0.00 N/A N/A
ENSG00000265102 ENST00000585264 N/A N/A N/A 0.188±0.00 N/A N/A N/A 0.921±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000057147 ENSMUST00000028640 1.781±0.60 8.450±3.18 N/A 1.052±0.00 2.325±0.60 1.690±0.56 0.985±0.34 2.275±1.05 1.142±0.41 2.905±0.42 0.298±0.05 7.679±3.66 1.930±0.11 0.583±0.06
ENSMUST00000055144 2.133±0.00 6.769±1.88 N/A 0.190±0.00 2.088±0.05 0.646±0.00 0.624±0.00 1.526±0.29 N/A 1.999±0.05 0.181±0.00 5.723±2.11 2.588±0.00 0.221±0.00
ENSMUST00000102542 2.673±1.27 3.947±0.86 4.925±0.32 2.321±1.07 1.326±0.38 1.542±0.68 0.793±0.00 2.047±0.52 3.060±1.47 3.031±1.30 0.957±0.26 3.793±1.02 4.044±2.30 2.295±1.08
ENSMUST00000138106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.744±0.00
ENSMUST00000138975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150447 N/A N/A 1.093±0.06 0.589±0.39 N/A N/A 0.516±0.09 N/A 0.818±0.30 N/A 0.339±0.07 1.418±0.63 N/A 0.590±0.41
ENSMUSG00000084222 ENSMUST00000121371 N/A N/A N/A 0.022±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00
ENSMUSG00000084785 ENSMUST00000153726 N/A N/A 0.002±0.00 0.003±0.00 N/A N/A N/A 0.015±0.00 0.002±0.00 N/A N/A 0.005±0.00 0.002±0.00 N/A
ENSMUSG00000085222 ENSMUST00000144368 N/A N/A N/A 0.063±0.03 N/A N/A N/A 0.043±0.01 0.006±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000099361 ENSMUST00000190899 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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