C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 45
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560893 HNRNPA1P45-001 ENSG00000259411 9606 + 15:35400691-35401768 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000560893
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000560893 0.013±0.00 0.132±0.00 0.124±0.00 0.094±0.07 0.139±0.11 0.059±0.02 0.013±0.00 0.188±0.00 0.076±0.05 0.012±0.00 0.027±0.00 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IU CIL_0008IU_0001 VISTA 15:34953121-35554645
CIL_0006HH CIL_0006HH_0001 CGP 15:34978341-35546193
CIL_0006HI CIL_0006HI_0001 CGP 15:35217345-36810248
CIL_0007MM CIL_0007MM_0001 UCNEbase 15:35253766-37880700
CIL_0008V7 CIL_0008V7_0001 VISTA 15:35326518-35927420

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 863
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 806
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 388
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 383
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 350
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 316
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 2e-30 137

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