C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465012 RP11-178L8.1-001 ENSG00000243705 9606 + 16:87268185-87268337 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastENST00000465012
Transcript ID Adipose Adrenal Breast
ENST00000465012 0.519±0.00 0.323±0.00 0.204±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002T1 CIL_0002T1_0001 CGP 16:86576368-87317420
CIL_0008WG CIL_0008WG_0001 VISTA 16:87215497-87815964

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 0 193
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 189
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 189
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 0 187
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 1.4013e-45 185
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 2.8026e-45 183
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 4.06377e-44 180
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 1.99993e-41 171
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 1e-39 165
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 1e-38 161
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 5e-38 159
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 2e-36 154

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