C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Iroquois related homeobox 5 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034184 Irx5-001 ENSMUSG00000031737 10090 + 8:92357796-92361456 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034184
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034184 0.069±0.03 2.745±0.75 0.098±0.02 6.357±4.63 5.493±2.43 0.021±0.01 2.367±0.60 2.027±0.44 0.035±0.02 15.318±2.20 0.221±0.20 4.019±0.91 0.192±0.14 4.143±1.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00080N CIL_00080N_0002 VISTA 8:91758697-92359642
CIL_00080R CIL_00080R_0002 VISTA 8:91763820-92364618
CIL_0008KP CIL_0008KP_0002 VISTA 8:91765542-92366816
CIL_0008ZH CIL_0008ZH_0002 VISTA 8:91770441-92371690
CIL_0008ZE CIL_0008ZE_0002 VISTA 8:91794559-92395829
CIL_0006IA CIL_0006IA_0002 CGP 8:91798525-92361456
CIL_0008ZD CIL_0008ZD_0002 VISTA 8:91800436-92401518
CIL_0008ZG CIL_0008ZG_0002 VISTA 8:91813436-92415404
CIL_0008ZF CIL_0008ZF_0002 VISTA 8:91827674-92428542
CIL_0008ZB CIL_0008ZB_0002 VISTA 8:91919224-92520146
CIL_0008ZC CIL_0008ZC_0002 VISTA 8:91931178-92532317
CIL_000986 CIL_000986_0002 VISTA 8:92144893-92745556
CIL_000989 CIL_000989_0002 VISTA 8:92149353-92750411
CIL_00098A CIL_00098A_0002 VISTA 8:92245404-92846474
CIL_000987 CIL_000987_0002 VISTA 8:92255075-92855722
CIL_0007WY CIL_0007WY_0002 VISTA 8:92348089-92949598
CIL_0006KT CIL_0006KT_0002 CGP 8:92357796-92680956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002027 IMP regulation of heart rate
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007601 IEA visual perception
GO:0008406 IEA gonad development
GO:0010468 IMP regulation of gene expression
GO:0042551 IGI neuron maturation
GO:0043565 IEA sequence-specific DNA binding
GO:0048468 IMP cell development
GO:0048701 IEA embryonic cranial skeleton morphogenesis
GO:0050896 IEA response to stimulus
GO:0060040 IGI retinal bipolar neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290552 IRX6-001 protein_coding Homo_sapiens 0 244
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 0 239
ENST00000302057 IRX2-002 protein_coding Homo_sapiens 0 375
ENST00000320990 IRX5-002 protein_coding Homo_sapiens 0 2484
ENST00000329734 IRX3-001 protein_coding Homo_sapiens 0 259
ENST00000382611 IRX2-001 protein_coding Homo_sapiens 0 375
ENST00000394636 IRX5-001 protein_coding Homo_sapiens 0 2856
ENST00000558180 IRX3-002 retained_intron Homo_sapiens 0 259
ENST00000558315 IRX6-002 processed_transcript Homo_sapiens 0 230
ENST00000558597 IRX5-004 protein_coding Homo_sapiens 0 1626
ENST00000560154 IRX5-003 protein_coding Homo_sapiens 0 601
ENST00000620085 IRX5-201 protein_coding Homo_sapiens 0 586

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