C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009A5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs209 VISTA 9606 3:137028702-137630429
GeneTranscriptPositionBiotype
ENSG00000201325 (RNA5SP142)
RNA, 5S ribosomal pseudogene 142 		ENST00000364455 (RNA5SP142-201) 137518134-137518255 rRNA
ENSG00000243886 (RP11-575C1.1)
 ENST00000474107 (RP11-575C1.1-001) 137535572-137536142 processed_pseudogene
CIL_0009A5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs209 VISTA 10090 9:99910151-100511937
GeneTranscriptPositionBiotype
ENSMUSG00000032475 (Nck1)
non-catalytic region of tyrosine kinase adaptor protein 1 		ENSMUST00000112874 (Nck1-002) 100495003-100506856 protein_coding
ENSMUST00000116522 (Nck1-001) 100492293-100546134 protein_coding
ENSMUST00000186591 (Nck1-006) 100497577-100546122 protein_coding
ENSMUST00000188670 (Nck1-003) 100497800-100545731 protein_coding
ENSMUSG00000044244 (Il20rb)
interleukin 20 receptor beta 		ENSMUST00000098458 (Il20rb-001) 100457719-100486788 protein_coding
ENSMUST00000122880 (Il20rb-002) 100465708-100486385 retained_intron
ENSMUST00000125259 (Il20rb-006) 100458530-100461735 retained_intron
ENSMUST00000136606 (Il20rb-003) 100457721-100466875 retained_intron
ENSMUST00000136856 (Il20rb-004) 100457804-100461763 processed_transcript
ENSMUST00000152756 (Il20rb-005) 100459077-100470609 processed_transcript
ENSMUSG00000099631 (RP23-14N2.2)
predicted gene 8641 		ENSMUST00000186995 (RP23-14N2.2-001) 99946564-99947389 processed_pseudogene
ENSMUSG00000100122 (RP23-368K22.2)
predicted gene 28267 		ENSMUST00000191093 (RP23-368K22.2-001) 100404495-100404759 processed_pseudogene
ENSMUSG00000101042 (RP24-294E6.1)
predicted gene 28167 		ENSMUST00000187644 (RP24-294E6.1-001) 100321611-100323524 lincRNA
ENSMUSG00000101287 (RP23-368K22.3)
predicted gene 28166 		ENSMUST00000187637 (RP23-368K22.3-001) 100450322-100451912 lincRNA
ENSMUSG00000101584 (RP23-14N2.1)
RIKEN cDNA 4930519F24 gene 		ENSMUST00000185764 (RP23-14N2.1-001) 100022300-100034672 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009A5_0001ENSG00000201325ENST00000364455ENSG00000243886ENST00000474107CIL_0009A5_0002ENSMUSG00000032475ENSMUST00000112874ENSMUST00000116522ENSMUST00000186591ENSMUST00000188670ENSMUSG00000044244ENSMUST00000098458ENSMUST00000122880ENSMUST00000125259ENSMUST00000136606ENSMUST00000136856ENSMUST00000152756ENSMUSG00000099631ENSMUST00000186995ENSMUSG00000100122ENSMUST00000191093ENSMUSG00000101042ENSMUST00000187644ENSMUSG00000101287ENSMUST00000187637ENSMUSG00000101584ENSMUST00000185764
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009A5_0001ENSG00000201325ENST00000364455ENSG00000243886ENST00000474107CIL_0009A5_0002ENSMUSG00000032475ENSMUST00000112874ENSMUST00000116522ENSMUST00000186591ENSMUSG00000044244ENSMUST00000098458ENSMUST00000122880ENSMUST00000125259ENSMUST00000136606ENSMUST00000136856ENSMUST00000152756ENSMUSG00000099631ENSMUST00000186995ENSMUSG00000100122ENSMUST00000191093ENSMUSG00000101042ENSMUST00000187644ENSMUSG00000101287ENSMUST00000187637ENSMUSG00000101584ENSMUST00000185764
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000201325 ENST00000364455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.820±0.00
ENSG00000243886 ENST00000474107 N/A N/A N/A N/A 0.123±0.00 N/A 0.095±0.00 N/A 0.053±0.00 N/A 0.179±0.00 N/A N/A 0.115±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032475 ENSMUST00000112874 6.386±1.12 N/A 9.229±4.01 6.454±1.79 4.281±1.06 1.645±0.88 4.977±0.91 2.420±0.45 4.461±3.19 5.264±1.56 6.098±1.72 8.927±8.30 14.323±2.96 5.085±1.49
ENSMUST00000116522 1.223±0.21 1.092±0.17 1.195±0.51 1.364±0.83 1.135±0.32 1.870±0.37 0.920±0.16 1.290±0.36 1.483±0.48 3.267±0.71 0.654±0.07 2.040±0.89 2.661±0.01 1.713±0.58
ENSMUST00000186591 N/A N/A 6.796±0.00 4.774±0.40 N/A N/A N/A N/A 4.332±0.33 N/A 4.099±0.00 9.639±1.29 9.602±2.63 8.240±4.96
ENSMUST00000188670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000044244 ENSMUST00000098458 0.833±0.27 0.203±0.02 0.339±0.10 0.293±0.04 1.010±0.57 0.417±0.23 0.143±0.10 0.128±0.05 0.220±0.08 0.977±0.55 0.395±0.20 1.832±0.61 0.408±0.13 0.329±0.14
ENSMUST00000122880 N/A 0.292±0.04 N/A N/A N/A 0.221±0.00 0.135±0.04 N/A 0.144±0.08 N/A 0.383±0.00 1.420±0.00 0.308±0.00 N/A
ENSMUST00000125259 1.097±0.33 0.187±0.04 0.409±0.00 0.273±0.00 N/A 0.281±0.02 0.104±0.00 0.322±0.05 0.276±0.13 0.677±0.00 0.319±0.00 2.048±0.81 0.359±0.09 0.354±0.00
ENSMUST00000136606 0.381±0.02 N/A 0.475±0.18 0.155±0.03 N/A 0.267±0.09 N/A N/A 0.134±0.04 N/A 0.142±0.00 0.647±0.00 0.183±0.07 0.158±0.07
ENSMUST00000136856 1.059±0.36 0.150±0.06 0.539±0.16 0.224±0.09 0.239±0.01 0.551±0.14 0.216±0.06 0.163±0.01 0.187±0.06 0.644±0.14 0.394±0.11 1.175±0.21 0.333±0.09 0.122±0.00
ENSMUST00000152756 N/A N/A N/A 0.175±0.00 N/A N/A N/A 0.242±0.01 N/A N/A 0.494±0.00 N/A N/A 0.392±0.07
ENSMUSG00000099631 ENSMUST00000186995 0.106±0.00 N/A 0.011±0.00 0.020±0.01 N/A N/A 0.068±0.02 0.051±0.00 0.045±0.03 N/A 0.063±0.01 0.669±0.86 0.059±0.05 0.062±0.00
ENSMUSG00000100122 ENSMUST00000191093 N/A N/A N/A N/A 0.597±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000101042 ENSMUST00000187644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.480±0.28
ENSMUSG00000101287 ENSMUST00000187637 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.01 0.289±0.29 N/A
ENSMUSG00000101584 ENSMUST00000185764 N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.493±4.85

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