C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009AS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1590 VISTA 9606 20:40438600-41039972
GeneTranscriptPositionBiotype
ENSG00000198900 (TOP1)
topoisomerase (DNA) I 		ENST00000361337 (TOP1-001) 41028818-41124487 protein_coding
ENSG00000204103 (MAFB)
v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 		ENST00000373313 (MAFB-001) 40685848-40689240 protein_coding
ENSG00000222612 (RNU2-52P)
RNA, U2 small nuclear 52, pseudogene 		ENST00000410680 (RNU2-52P-201) 41024205-41024394 snRNA
ENSG00000229771 (RP4-644L1.2)
 ENST00000428495 (RP4-644L1.2-001) 40696499-40698616 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0009AS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1590 VISTA 10090 2:160115715-160717232
GeneTranscriptPositionBiotype
ENSMUSG00000070544 (Top1)
topoisomerase (DNA) I 		ENSMUST00000109468 (Top1-001) 160645888-160722764 protein_coding
ENSMUST00000129289 (Top1-003) 160670133-160684951 retained_intron
ENSMUST00000133262 (Top1-002) 160645980-160650107 processed_transcript
ENSMUST00000150039 (Top1-004) 160717469-160721384 retained_intron
ENSMUST00000164510 (Top1-006) 160702143-160703679 processed_transcript
ENSMUST00000164694 (Top1-005) 160685669-160693716 retained_intron
ENSMUSG00000074622 (Mafb)
v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) 		ENSMUST00000099126 (Mafb-001) 160363703-160367065 protein_coding
ENSMUSG00000074623 (Gm826)
predicted gene 826 		ENSMUST00000099127 (Gm826-003) 160311861-160327494 protein_coding
ENSMUST00000109475 (Gm826-001) 160311393-160313616 protein_coding
ENSMUST00000138905 (Gm826-002) 160311744-160334162 processed_transcript
ENSMUSG00000078955 (Gm14222)
predicted gene 14222 		ENSMUST00000128681 (Gm14222-001) 160583357-160585191 sense_intronic
ENSMUSG00000078956 (Gm14221)
predicted gene 14221 		ENSMUST00000109473 (Gm14221-001) 160568379-160619971 protein_coding
ENSMUSG00000094247 (Gm23968)
predicted gene, 23968 		ENSMUST00000175047 (Gm23968-201) 160624468-160624592 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009AS_0001ENSG00000198900ENST00000361337ENSG00000204103ENST00000373313ENSG00000222612ENST00000410680ENSG00000229771ENST00000428495CIL_0009AS_0002ENSMUSG00000070544ENSMUST00000109468ENSMUST00000129289ENSMUST00000133262ENSMUST00000150039ENSMUST00000164510ENSMUST00000164694ENSMUSG00000074622ENSMUST00000099126ENSMUSG00000074623ENSMUST00000099127ENSMUST00000109475ENSMUST00000138905ENSMUSG00000078955ENSMUST00000128681ENSMUSG00000078956ENSMUST00000109473ENSMUSG00000094247ENSMUST00000175047
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009AS_0001ENSG00000198900ENST00000361337ENSG00000204103ENST00000373313ENSG00000222612ENST00000410680ENSG00000229771ENST00000428495CIL_0009AS_0002ENSMUSG00000070544ENSMUST00000109468ENSMUSG00000074622ENSMUST00000099126ENSMUSG00000074623ENSMUST00000099127ENSMUST00000109475ENSMUST00000138905ENSMUSG00000078955ENSMUST00000128681ENSMUSG00000078956ENSMUST00000109473ENSMUSG00000094247ENSMUST00000175047
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000198900 ENST00000361337 15.936±0.00 16.667±0.00 2.262±0.00 5.701±3.75 11.109±2.11 12.413±11.05 10.103±0.00 27.022±0.00 7.670±4.34 37.451±0.00 5.127±3.65 27.442±26.10 29.408±16.77 28.371±8.37
ENSG00000204103 ENST00000373313 16.295±0.00 16.152±0.00 1.226±0.00 3.986±3.09 9.115±4.73 1.580±0.55 3.541±2.89 9.451±4.82 3.998±1.73 5.352±2.11 2.073±1.08 4.896±2.09 11.804±1.16 3.720±1.95
ENSG00000222612 ENST00000410680 0.066±0.00 N/A N/A N/A N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A 0.760±0.62 0.200±0.00
ENSG00000229771 ENST00000428495 N/A 0.008±0.00 N/A 0.016±0.00 0.046±0.00 0.028±0.00 N/A 0.046±0.00 0.034±0.00 0.083±0.00 N/A 0.048±0.03 N/A 0.066±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000070544 ENSMUST00000109468 3.993±1.02 75.295±19.04 10.858±0.46 18.563±3.69 2.247±0.35 3.004±0.91 2.823±0.41 4.137±0.58 13.911±11.99 5.207±0.31 6.734±0.99 26.336±26.39 40.654±22.01 5.018±1.12
ENSMUST00000129289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074622 ENSMUST00000099126 3.984±0.47 4.795±0.61 4.308±0.58 3.736±1.54 11.527±6.07 6.084±1.37 1.567±0.40 4.008±0.23 3.152±0.93 2.460±0.17 6.031±2.96 5.577±0.88 1.223±1.09 1.454±0.88
ENSMUSG00000074623 ENSMUST00000099127 N/A 0.131±0.00 N/A N/A 0.199±0.00 0.242±0.13 4.103±0.58 0.076±0.00 1.396±0.99 0.183±0.04 0.469±0.19 0.077±0.00 1.244±0.83 0.118±0.04
ENSMUST00000109475 0.071±0.02 0.335±0.00 N/A 0.045±0.01 0.128±0.03 0.274±0.10 2.568±0.81 0.077±0.01 1.048±0.82 0.098±0.05 0.437±0.18 0.145±0.06 0.663±0.80 0.169±0.12
ENSMUST00000138905 0.068±0.00 0.289±0.09 0.186±0.00 N/A 0.200±0.05 0.213±0.11 N/A 0.168±0.09 0.301±0.03 0.130±0.05 0.428±0.18 0.161±0.02 N/A 0.066±0.00
ENSMUSG00000078955 ENSMUST00000128681 N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.02 0.197±0.00 N/A 0.092±0.00 0.196±0.08 0.531±0.21
ENSMUSG00000078956 ENSMUST00000109473 N/A N/A N/A 0.084±0.00 0.564±0.00 N/A N/A 0.163±0.00 N/A 1.011±0.00 N/A 0.882±0.50 0.455±0.00 0.245±0.09
ENSMUSG00000094247 ENSMUST00000175047 N/A N/A N/A 14.613±8.23 2730.483±1895.92 N/A 1081.760±25.30 929.627±87.33 10.336±3.57 728.361±165.45 N/A 18.563±0.13 5.941±2.33 1024.280±0.00

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