C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor alpha a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000000160 thraa-001 ENSDARG00000000151 7955 - 3:34782574-34838901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000000160
Transcript ID Brain Heart Kidney Muscle
ENSDART00000000160 2.615±0.75 1.286±0.56 1.933±1.53 0.920±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001076 IDA RNA polymerase II transcription factor binding transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004887 IEA thyroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0009725 IDA response to hormone
GO:0030522 IDA intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-dependent
GO:0045893 IDA positive regulation of transcription, DNA-dependent
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064187 Thra-001 protein_coding Mus_musculus 0 717
ENSMUST00000103139 Thra-003 protein_coding Mus_musculus 0 852
ENSMUST00000124072 Thra-004 protein_coding Mus_musculus 0 717
ENST00000264637 THRA-001 protein_coding Homo_sapiens 0 761
ENST00000280696 THRB-003 protein_coding Homo_sapiens 0 484
ENST00000356447 THRB-001 protein_coding Homo_sapiens 0 484
ENST00000367979 NR1I3-036 protein_coding Homo_sapiens 0.0000000007 69
ENST00000367980 NR1I3-201 protein_coding Homo_sapiens 0.0000000009 69
ENST00000367982 NR1I3-002 protein_coding Homo_sapiens 0.0000000008 69
ENST00000367983 NR1I3-001 protein_coding Homo_sapiens 0.0000000009 69
ENST00000367984 NR1I3-011 protein_coding Homo_sapiens 0.0000000007 69
ENST00000367985 NR1I3-012 protein_coding Homo_sapiens 0.0000000007 69
ENST00000394121 THRA-003 protein_coding Homo_sapiens 0 761
ENST00000396671 THRB-201 protein_coding Homo_sapiens 0 484
ENST00000416420 THRB-004 protein_coding Homo_sapiens 0 484
ENST00000428574 NR1I3-031 protein_coding Homo_sapiens 0.0000000007 69
ENST00000442691 NR1I3-029 protein_coding Homo_sapiens 0.0000000007 69
ENST00000450525 THRA-002 protein_coding Homo_sapiens 0 891
ENST00000502848 NR1I3-020 nonsense_mediated_decay Homo_sapiens 0.0000000006 69
ENST00000502985 NR1I3-016 protein_coding Homo_sapiens 0.0000000005 69
ENST00000505005 NR1I3-032 protein_coding Homo_sapiens 0.0000000006 69
ENST00000511944 NR1I3-026 protein_coding Homo_sapiens 0.0000000004 69
ENST00000515452 NR1I3-008 protein_coding Homo_sapiens 0.0000000007 69
ENST00000546243 THRA-006 protein_coding Homo_sapiens 0 891
ENST00000577637 THRA-011 retained_intron Homo_sapiens 9.00054e-42 174
ENST00000584985 THRA-005 protein_coding Homo_sapiens 0 761

Loading