C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) receptor, rho 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000012376 gabrr1-001 ENSDARG00000043902 7955 - 20:1155401-1174574 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSDART00000012376
Transcript ID Brain Kidney
ENSDART00000012376 0.306±0.00 0.050±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0030054 IEA cell junction
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024035 Gabrr2-201 protein_coding Mus_musculus 0 784
ENSMUST00000029947 Gabrr1-001 protein_coding Mus_musculus 0 861
ENSMUST00000108162 Gabrr2-001 protein_coding Mus_musculus 0 784
ENSMUST00000131920 Gabrr2-003 protein_coding Mus_musculus 0 549
ENSMUST00000147889 Gabrr2-002 protein_coding Mus_musculus 0 505
ENST00000369451 GABRR1-003 protein_coding Homo_sapiens 0 773
ENST00000402938 GABRR2-001 protein_coding Homo_sapiens 0 717
ENST00000435811 GABRR1-201 protein_coding Homo_sapiens 0 773
ENST00000454853 GABRR1-001 protein_coding Homo_sapiens 0 773
ENST00000457434 GABRR1-002 nonsense_mediated_decay Homo_sapiens 0 773
ENST00000602432 GABRR2-002 retained_intron Homo_sapiens 0 632
ENST00000611484 GABRR1-202 protein_coding Homo_sapiens 0 773
ENST00000621627 GABRR1-203 protein_coding Homo_sapiens 0 773

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