C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, rho 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402938 GABRR2-001 ENSG00000111886 9606 - 6:89257520-89315299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyMusclePlacentaENST00000402938
Transcript ID Brain Breast Kidney Muscle Placenta
ENST00000402938 0.023±0.00 0.044±0.00 0.024±0.00 0.054±0.00 0.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BT CIL_0006BT_0002 CGP 6:89257208-89352848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0007165 TAS signal transduction
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0007268 TAS synaptic transmission
GO:0007601 IEA visual perception
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0055085 TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024035 Gabrr2-201 protein_coding Mus_musculus 0 1703
ENSMUST00000108162 Gabrr2-001 protein_coding Mus_musculus 0 1703
ENSMUST00000029947 Gabrr1-001 protein_coding Mus_musculus 0 891
ENSMUST00000147889 Gabrr2-002 protein_coding Mus_musculus 0 839
ENSMUST00000131920 Gabrr2-003 protein_coding Mus_musculus 0 837
ENSDART00000011946 GABRR1 (1 of 2)-201 protein_coding Danio_rerio 0 745
ENSDART00000012376 gabrr1-001 protein_coding Danio_rerio 0 717
ENSDART00000152675 gabrr1-002 protein_coding Danio_rerio 0 255

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