C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029947 Gabrr1-001 ENSMUSG00000028280 10090 + 4:33132521-33163588 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029947
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029947 0.060±0.02 0.020±0.02 0.072±0.03 0.064±0.03 0.038±0.01 0.073±0.00 0.024±0.00 0.008±0.00 0.030±0.01 0.144±0.06 0.077±0.06 0.083±0.05 0.021±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0007165 IEA signal transduction
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012376 gabrr1-001 protein_coding Danio_rerio 0 861
ENSDART00000152255 gabrr2b-201 protein_coding Danio_rerio 0 736
ENSDART00000023304 gabrr2b-001 protein_coding Danio_rerio 0 736
ENSDART00000048430 gabrr3a-001 protein_coding Danio_rerio 0 501
ENSDART00000152675 gabrr1-002 protein_coding Danio_rerio 0 353
ENSDART00000142566 gabrr3a-002 processed_transcript Danio_rerio 2e-28 132
ENST00000369451 GABRR1-003 protein_coding Homo_sapiens 0 1580
ENST00000402938 GABRR2-001 protein_coding Homo_sapiens 0 891
ENST00000435811 GABRR1-201 protein_coding Homo_sapiens 0 1546
ENST00000454853 GABRR1-001 protein_coding Homo_sapiens 0 1701
ENST00000457434 GABRR1-002 nonsense_mediated_decay Homo_sapiens 0 1563
ENST00000602432 GABRR2-002 retained_intron Homo_sapiens 0 776
ENST00000611484 GABRR1-202 protein_coding Homo_sapiens 0 1580
ENST00000621627 GABRR1-203 protein_coding Homo_sapiens 0 1580

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