C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) C receptor, subunit rho 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024035 Gabrr2-201 ENSMUSG00000023267 10090 + 4:33063112-33095865 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024035 0.448±0.47 0.091±0.05 0.020±0.00 0.147±0.06 0.771±0.48 0.128±0.07 1.080±0.37 0.204±0.07 0.040±0.03 0.188±0.04 0.321±0.07 0.227±0.17 0.170±0.13 0.218±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IMP GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 IEA plasma membrane
GO:0006821 TAS chloride transport
GO:0007214 IMP gamma-aminobutyric acid signaling pathway
GO:0007601 IMP visual perception
GO:0016021 IEA integral component of membrane
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0030424 TAS axon
GO:0034220 IEA ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011946 GABRR1 (1 of 2)-201 protein_coding Danio_rerio 0 817
ENSDART00000152255 gabrr2b-201 protein_coding Danio_rerio 0 804
ENSDART00000023304 gabrr2b-001 protein_coding Danio_rerio 0 804
ENSDART00000012376 gabrr1-001 protein_coding Danio_rerio 0 784
ENSDART00000155714 gabrr3b-001 protein_coding Danio_rerio 0 340
ENSDART00000152675 gabrr1-002 protein_coding Danio_rerio 0 311
ENSDART00000081124 gabrr3b-201 protein_coding Danio_rerio 0 268
ENST00000369451 GABRR1-003 protein_coding Homo_sapiens 0 883
ENST00000402938 GABRR2-001 protein_coding Homo_sapiens 0 1703
ENST00000435811 GABRR1-201 protein_coding Homo_sapiens 0 883
ENST00000454853 GABRR1-001 protein_coding Homo_sapiens 0 883
ENST00000457434 GABRR1-002 nonsense_mediated_decay Homo_sapiens 0 883
ENST00000602432 GABRR2-002 retained_intron Homo_sapiens 0 1397
ENST00000611484 GABRR1-202 protein_coding Homo_sapiens 0 883
ENST00000621627 GABRR1-203 protein_coding Homo_sapiens 0 883

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