C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000016211 tbp-001 ENSDARG00000014994 7955 - 13:24608059-24619893 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000016211
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000016211 8.584±2.61 4.054±2.42 6.608±3.03 2.312±0.00 3.084±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006352 IEA DNA-dependent transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0006402 IMP mRNA catabolic process
GO:0007275 IEA multicellular organismal development
GO:0007369 IMP gastrulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014911 Tbp-003 protein_coding Mus_musculus 0 558
ENSMUST00000117593 Tbp-004 protein_coding Mus_musculus 0 558
ENSMUST00000118001 Tbp-002 protein_coding Mus_musculus 4.06377e-44 183
ENSMUST00000149518 Tbp-009 retained_intron Mus_musculus 9.80909e-45 183
ENSMUST00000153480 Tbp-008 protein_coding Mus_musculus 0 488
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 0 558
ENST00000230354 TBP-001 protein_coding Homo_sapiens 0 523
ENST00000392092 TBP-201 protein_coding Homo_sapiens 0 523
ENST00000446829 TBP-002 protein_coding Homo_sapiens 5e-40 169
ENST00000540980 TBP-202 protein_coding Homo_sapiens 0 523
ENST00000616883 TBP-203 protein_coding Homo_sapiens 0 523

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