C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446829 TBP-002 ENSG00000112592 9606 + 6:170569612-170572853 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverENST00000446829
Transcript ID Kidney Liver
ENST00000446829 1.053±0.00 1.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018G CIL_00018G_0001 CGP 6:170535117-170572870
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006352 IEA DNA-templated transcription, initiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117593 Tbp-004 protein_coding Mus_musculus 0 372
ENSMUST00000014911 Tbp-003 protein_coding Mus_musculus 0 372
ENSMUST00000118001 Tbp-002 protein_coding Mus_musculus 0 372
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 0 372
ENSMUST00000149518 Tbp-009 retained_intron Mus_musculus 0 272
ENSMUST00000153480 Tbp-008 protein_coding Mus_musculus 0 272
ENSDART00000016211 tbp-001 protein_coding Danio_rerio 5e-40 169

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