C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TIA1 cytotoxic granule-associated RNA binding protein-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000022799 tial1-001 ENSDARG00000009525 7955 - 13:25695895-25708642 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000022799
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000022799 26.081±12.63 9.409±1.17 8.625±0.00 0.905±0.00 9.209±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GP CIL_0004GP_0001 CGP 13:25695895-25722551

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033135 Tial1-004 protein_coding Mus_musculus 0 676
ENSMUST00000123666 Tial1-003 nonsense_mediated_decay Mus_musculus 0 283
ENSMUST00000133444 Tial1-002 processed_transcript Mus_musculus 0 675
ENSMUST00000141079 Tial1-007 retained_intron Mus_musculus 0 571
ENSMUST00000165023 Tial1-201 protein_coding Mus_musculus 0 676
ENST00000369086 TIAL1-013 protein_coding Homo_sapiens 0 283
ENST00000412524 TIAL1-012 protein_coding Homo_sapiens 0 387
ENST00000436547 TIAL1-009 protein_coding Homo_sapiens 0 704
ENST00000470781 TIAL1-008 retained_intron Homo_sapiens 0 586
ENST00000489822 TIAL1-006 retained_intron Homo_sapiens 0 588
ENST00000497671 TIAL1-007 nonsense_mediated_decay Homo_sapiens 0 294

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