C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TIA1 cytotoxic granule-associated RNA binding protein-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436547 TIAL1-009 ENSG00000151923 9606 - 10:119575437-119596510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000436547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000436547 17.528±0.00 13.554±0.00 0.826±0.00 10.725±3.72 8.543±4.91 10.813±3.43 6.110±4.64 9.526±2.43 6.676±1.74 11.324±5.14 9.471±5.59 19.448±8.86 15.887±0.58 20.521±3.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IZ CIL_0003IZ_0001 CGP 10:119499828-119597029
CIL_0004GP CIL_0004GP_0002 CGP 10:119571802-119677819

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005764 TAS lysosome
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0006952 TAS defense response
GO:0010494 ISS cytoplasmic stress granule
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033135 Tial1-004 protein_coding Mus_musculus 0 2130
ENSMUST00000165023 Tial1-201 protein_coding Mus_musculus 0 2093
ENSMUST00000133444 Tial1-002 processed_transcript Mus_musculus 0 2001
ENSMUST00000106226 Tial1-001 protein_coding Mus_musculus 0 1847
ENSMUST00000141126 Tial1-005 processed_transcript Mus_musculus 0 1652
ENSMUST00000141079 Tial1-007 retained_intron Mus_musculus 0 1443
ENSMUST00000123666 Tial1-003 nonsense_mediated_decay Mus_musculus 0 1402
ENSMUST00000133089 Tial1-010 processed_transcript Mus_musculus 0 907
ENSDART00000022799 tial1-001 protein_coding Danio_rerio 0 704
ENSMUST00000106228 Tial1-006 protein_coding Mus_musculus 0 484
ENSMUST00000136782 Tial1-009 retained_intron Mus_musculus 0 448
ENSMUST00000152328 Tial1-008 retained_intron Mus_musculus 0 342

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