C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(rC) binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000025885 pcbp2-001 ENSDARG00000013184 7955 + 9:220332-231565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000025885
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000025885 62.666±30.50 54.060±25.02 22.819±3.33 9.971±0.00 41.494±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033G CIL_00033G_0001 CGP 9:220332-265019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001148 Pcbp3-002 protein_coding Mus_musculus 0 470
ENSMUST00000092393 Pcbp3-007 nonsense_mediated_decay Mus_musculus 0 427
ENSMUST00000105411 Pcbp3-001 protein_coding Mus_musculus 0 473
ENSMUST00000168240 Pcbp3-005 processed_transcript Mus_musculus 0 305
ENSMUST00000168465 Pcbp3-201 protein_coding Mus_musculus 0 470
ENSMUST00000168505 Pcbp3-003 processed_transcript Mus_musculus 0 418
ENSMUST00000173854 Pcbp3-008 protein_coding Mus_musculus 0 191
ENST00000517662 RP11-730G20.2-001 processed_pseudogene Homo_sapiens 0 518

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