C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acid-sensing (proton-gated) ion channel 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000028603 asic1b-201 ENSDARG00000027512 7955 - 22:6991902-7115299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000028603
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000028603 7.349±5.18 0.752±0.02 1.059±0.34 0.261±0.00 1.048±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005272 IEA sodium channel activity
GO:0005886 IEA plasma membrane
GO:0005887 IDA integral to plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0015280 IEA ligand-gated sodium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0035725 IDA sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228468 ASIC1-001 protein_coding Homo_sapiens 0 573
ENST00000447966 ASIC1-002 protein_coding Homo_sapiens 0 634
ENST00000453327 ASIC1-007 protein_coding Homo_sapiens 0 634
ENST00000548350 ASIC1-006 retained_intron Homo_sapiens 2e-27 126
ENST00000550558 ASIC1-003 nonsense_mediated_decay Homo_sapiens 0 634
ENST00000551199 ASIC1-004 retained_intron Homo_sapiens 0 512
ENST00000552438 ASIC1-009 protein_coding Homo_sapiens 0 634

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