C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000051763 rps3a-001 ENSDARG00000035692 7955 + 1:23130372-23134510 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000051763
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000051763 285.911±44.62 1398.202±985.99 419.447±581.03 800.730±0.00 923.702±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LR CIL_0006LR_0001 CGP 1:22850438-23134510

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002181 IBA cytoplasmic translation
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005829 IBA cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0009790 IMP embryo development
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029722 Rps3a1-001 protein_coding Mus_musculus 0 580
ENSMUST00000074245 Rps3a2-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000074680 Rps3a3-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000119822 Gm13408-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000121859 Gm13935-001 processed_pseudogene Mus_musculus 0 420

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