C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13408
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119822 Gm13408-001 ENSMUSG00000081992 10090 + 2:34564999-34565796 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000119822
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119822 0.120±0.04 0.248±0.04 3.760±4.09 0.085±0.00 0.163±0.00 0.073±0.03 10.888±17.07 0.075±0.00 0.091±0.04 0.319±0.18 0.174±0.14 0.176±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LN CIL_0007LN_0002 UCNEbase 2:33746984-34647960
CIL_0008I6 CIL_0008I6_0002 VISTA 2:33986508-34588340
CIL_000848 CIL_000848_0002 VISTA 2:34010581-34611103
CIL_0008R5 CIL_0008R5_0002 VISTA 2:34054690-34656547
CIL_000961 CIL_000961_0002 VISTA 2:34056455-34659025
CIL_0008GT CIL_0008GT_0002 VISTA 2:34059231-34660874
CIL_0008Q0 CIL_0008Q0_0002 VISTA 2:34063448-34664810
CIL_0008LX CIL_0008LX_0002 VISTA 2:34155217-34756803
CIL_00080V CIL_00080V_0002 VISTA 2:34162107-34763282

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000051763 rps3a-001 protein_coding Danio_rerio 0 538
ENSDART00000137066 rps3a-002 retained_intron Danio_rerio 0 191
ENST00000274065 RPS3A-001 protein_coding Homo_sapiens 0 955
ENST00000389400 RPS3AP5-001 processed_pseudogene Homo_sapiens 0 508
ENST00000397972 RPS3AP33-001 processed_pseudogene Homo_sapiens 0 575
ENST00000398259 RPS3AP26-001 processed_pseudogene Homo_sapiens 0 924
ENST00000411660 RPS3AP25-001 processed_pseudogene Homo_sapiens 0 832
ENST00000418798 AC013429.5-001 processed_pseudogene Homo_sapiens 0 545
ENST00000419176 RP11-119F7.3-001 processed_pseudogene Homo_sapiens 0 593
ENST00000426436 RPS3AP39-001 processed_pseudogene Homo_sapiens 0 627
ENST00000426743 RP11-163G10.2-001 processed_pseudogene Homo_sapiens 0 544
ENST00000437728 RPS3AP29-001 processed_pseudogene Homo_sapiens 0 649
ENST00000438784 RPS3AP30-001 processed_pseudogene Homo_sapiens 0 627
ENST00000442655 RP11-747H12.5-001 processed_pseudogene Homo_sapiens 0 621
ENST00000443616 RPS3AP12-001 processed_pseudogene Homo_sapiens 0 353
ENST00000450463 CTB-1048E9.7-001 processed_pseudogene Homo_sapiens 0 710
ENST00000451219 CTA-85E5.6-001 processed_pseudogene Homo_sapiens 0 628
ENST00000454716 RPS3AP53-001 processed_pseudogene Homo_sapiens 0 621
ENST00000454879 RP11-548N1.1-001 processed_pseudogene Homo_sapiens 0 311
ENST00000461022 AC010468.1-001 processed_pseudogene Homo_sapiens 0 787
ENST00000462701 RPS3AP41-001 processed_pseudogene Homo_sapiens 0 569
ENST00000468675 RP11-1396O13.2-001 processed_pseudogene Homo_sapiens 0 616
ENST00000470389 RP11-382N13.1-001 processed_pseudogene Homo_sapiens 0 610
ENST00000472161 RPS3AP49-001 processed_pseudogene Homo_sapiens 0 830
ENST00000474167 CTC-451P13.1-001 processed_pseudogene Homo_sapiens 0 826
ENST00000478386 RPS3AP35-001 processed_pseudogene Homo_sapiens 0 599
ENST00000479743 RPS3AP43-001 processed_pseudogene Homo_sapiens 0 638
ENST00000480160 RPS3AP40-001 processed_pseudogene Homo_sapiens 0 638
ENST00000483613 RPS3AP34-001 processed_pseudogene Homo_sapiens 0 616
ENST00000483874 RPS3AP15-001 processed_pseudogene Homo_sapiens 0 660
ENST00000484430 RPS3AP6-001 processed_pseudogene Homo_sapiens 0 939
ENST00000485355 RP11-489M13.1-001 processed_pseudogene Homo_sapiens 0 621
ENST00000487100 RPS3AP47-001 processed_pseudogene Homo_sapiens 0 861
ENST00000488297 RPS3AP22-001 processed_pseudogene Homo_sapiens 0 616
ENST00000493479 RP11-555K12.1-001 processed_pseudogene Homo_sapiens 0 708
ENST00000498840 RP11-52B19.1-001 processed_pseudogene Homo_sapiens 0 610
ENST00000503002 RPS3A-008 protein_coding Homo_sapiens 0 281
ENST00000505243 RPS3A-005 protein_coding Homo_sapiens 0 414
ENST00000506126 RPS3A-007 protein_coding Homo_sapiens 0 863
ENST00000507327 RPS3A-011 protein_coding Homo_sapiens 0 824
ENST00000507485 RPS3A-002 retained_intron Homo_sapiens 0 244
ENST00000508783 RPS3A-009 protein_coding Homo_sapiens 0 486
ENST00000509736 RPS3A-006 protein_coding Homo_sapiens 0 520
ENST00000510993 RPS3A-010 protein_coding Homo_sapiens 0 798
ENST00000512690 RPS3A-015 protein_coding Homo_sapiens 0 909
ENST00000512797 RPS3A-014 protein_coding Homo_sapiens 0 610
ENST00000514682 RPS3A-004 protein_coding Homo_sapiens 0 863
ENST00000515792 RPS3A-012 protein_coding Homo_sapiens 0 520
ENST00000515818 RPS3A-013 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000517591 AC008694.2-001 processed_pseudogene Homo_sapiens 0 248
ENST00000604922 SH3D19-012 processed_transcript Homo_sapiens 0 250

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