C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S3A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029722 Rps3a1-001 ENSMUSG00000028081 10090 - 3:86137940-86142702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029722
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029722 129.644±51.12 25.994±3.20 721.512±100.82 185.148±91.45 127.533±45.90 105.417±33.06 96.057±5.08 127.896±26.10 334.636±309.78 108.681±12.00 235.625±16.26 216.749±253.48 484.442±201.19 42.651±8.80

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002181 IBA cytoplasmic translation
GO:0003735 IBA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0005925 IEA focal adhesion
GO:0006412 ISS translation
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0030154 IEA cell differentiation
GO:0030529 ISS ribonucleoprotein complex
GO:0043066 ISS negative regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000051763 rps3a-001 protein_coding Danio_rerio 0 580
ENSDART00000137066 rps3a-002 retained_intron Danio_rerio 0 196
ENST00000274065 RPS3A-001 protein_coding Homo_sapiens 0 1109
ENST00000389400 RPS3AP5-001 processed_pseudogene Homo_sapiens 0 398
ENST00000398190 RP11-7D5.2-001 processed_pseudogene Homo_sapiens 0 778
ENST00000419176 RP11-119F7.3-001 processed_pseudogene Homo_sapiens 0 632
ENST00000426743 RP11-163G10.2-001 processed_pseudogene Homo_sapiens 0 562
ENST00000461022 AC010468.1-001 processed_pseudogene Homo_sapiens 0 830
ENST00000471604 RPS3AP42-001 processed_pseudogene Homo_sapiens 0 505
ENST00000472161 RPS3AP49-001 processed_pseudogene Homo_sapiens 0 876
ENST00000474167 CTC-451P13.1-001 processed_pseudogene Homo_sapiens 0 869
ENST00000479876 RPS3AP32-001 processed_pseudogene Homo_sapiens 0 407
ENST00000484430 RPS3AP6-001 processed_pseudogene Homo_sapiens 0 981
ENST00000487100 RPS3AP47-001 processed_pseudogene Homo_sapiens 0 902
ENST00000488297 RPS3AP22-001 processed_pseudogene Homo_sapiens 0 628
ENST00000493479 RP11-555K12.1-001 processed_pseudogene Homo_sapiens 0 737
ENST00000506126 RPS3A-007 protein_coding Homo_sapiens 0 933
ENST00000507327 RPS3A-011 protein_coding Homo_sapiens 0 859
ENST00000507485 RPS3A-002 retained_intron Homo_sapiens 0 250
ENST00000509736 RPS3A-006 protein_coding Homo_sapiens 0 592
ENST00000510993 RPS3A-010 protein_coding Homo_sapiens 0 833
ENST00000512690 RPS3A-015 protein_coding Homo_sapiens 0 1003
ENST00000512797 RPS3A-014 protein_coding Homo_sapiens 0 634
ENST00000514682 RPS3A-004 protein_coding Homo_sapiens 0 953
ENST00000515792 RPS3A-012 protein_coding Homo_sapiens 0 592
ENST00000515818 RPS3A-013 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000604922 SH3D19-012 processed_transcript Homo_sapiens 0 255

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