C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 13 (isopeptidase T-3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000065293 usp13-001 ENSDARG00000079198 7955 + 6:29124782-29183004 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000065293
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000065293 2.452±1.04 50.958±20.79 5.256±1.58 0.030±0.00 36.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049V CIL_00049V_0001 CGP 6:29116793-29183004
CIL_0003YE CIL_0003YE_0001 CGP 6:29124782-29326065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 IEA ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0006355 ISS regulation of transcription, DNA-dependent
GO:0006508 IEA proteolysis
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006914 IEA autophagy
GO:0008233 IEA peptidase activity
GO:0008234 IEA cysteine-type peptidase activity
GO:0008242 IEA omega peptidase activity
GO:0008270 IEA zinc ion binding
GO:0008283 ISS cell proliferation
GO:0010506 ISS regulation of autophagy
GO:0016787 IEA hydrolase activity
GO:0043130 ISS ubiquitin binding
GO:0046872 IEA metal ion binding
GO:0050821 ISS protein stabilization
GO:0070536 ISS protein K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072312 Usp13-001 protein_coding Mus_musculus 3.00004e-41 176
ENSMUST00000108228 Usp13-002 protein_coding Mus_musculus 9.99967e-42 176
ENSMUST00000156769 Usp13-003 protein_coding Mus_musculus 1e-20 104
ENST00000263966 USP13-001 protein_coding Homo_sapiens 1e-39 171
ENST00000496897 USP13-003 protein_coding Homo_sapiens 5e-40 171

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