C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY-box containing gene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000075617 sox3-001 ENSDARG00000053569 7955 + 14:33703957-33705720 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000075617
Transcript ID Brain Heart Kidney Muscle
ENSDART00000075617 7.009±2.59 0.465±0.26 0.861±0.46 0.716±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0007417 IMP central nervous system development
GO:0007422 IGI peripheral nervous system development
GO:0030182 IMP neuron differentiation
GO:0043049 IGI otic placode formation
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099151 Sox2-001 protein_coding Mus_musculus 0 244
ENSMUST00000170662 Sox21-001 protein_coding Mus_musculus 0 215
ENSMUST00000180353 Sox1-001 protein_coding Mus_musculus 0 246
ENST00000325404 SOX2-001 protein_coding Homo_sapiens 0 272
ENST00000330949 SOX1-001 protein_coding Homo_sapiens 0 279

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