C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: LIM domain only 4b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000076997 lmo4b-001 ENSDARG00000054749 7955 - 6:25668492-25687604 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000076997
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000076997 33.793±7.10 1.045±0.00 2.069±0.00 0.169±0.00 2.540±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N8 CIL_0007N8_0005 UCNEbase 6:25381261-25718815
CIL_0000F7 CIL_0000F7_0001 CGP 6:25668492-25815149

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120539 Lmo4-001 protein_coding Mus_musculus 0 442
ENSMUST00000121112 Lmo4-003 protein_coding Mus_musculus 0 442
ENSMUST00000121796 Lmo4-002 protein_coding Mus_musculus 0 442
ENSMUST00000148128 Lmo4-005 retained_intron Mus_musculus 0 261
ENST00000370542 LMO4-002 protein_coding Homo_sapiens 0 414
ENST00000370544 LMO4-001 protein_coding Homo_sapiens 0 414
ENST00000489303 LMO4-004 processed_transcript Homo_sapiens 0 414
ENST00000495705 LMO4-003 processed_transcript Homo_sapiens 0 261

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