C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCCTC-binding factor (zinc finger protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000079139 ctcf-001 ENSDARG00000056621 7955 + 18:22066703-22074083 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000079139
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000079139 23.202±3.93 7.426±1.77 8.744±1.86 1.373±0.00 5.256±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LR CIL_0003LR_0001 CGP 18:21955341-22074083
CIL_0006LW CIL_0006LW_0001 CGP 18:22066703-22268016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032591 Zfp12-001 protein_coding Mus_musculus 0.0001 55
ENSMUST00000075916 Zfp12-003 nonsense_mediated_decay Mus_musculus 0.00008 55
ENSMUST00000077485 Zfp12-002 protein_coding Mus_musculus 0.00008 55

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