C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB40c, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000087047 rab40c-001 ENSDARG00000061208 7955 + 3:26230413-26265982 protein_coding

Danio rerio EnsemblZv9

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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000087047
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000087047 14.713±2.86 3.272±1.88 2.082±1.26 1.433±0.00 6.705±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106107 Rab40b-001 protein_coding Mus_musculus 0 370
ENSMUST00000124639 Rab40b-002 processed_transcript Mus_musculus 7e-16 88
ENSMUST00000135290 Rab40b-003 processed_transcript Mus_musculus 6e-16 88
ENST00000248139 RAB40C-001 protein_coding Homo_sapiens 0 747
ENST00000509637 RAB40C-006 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000535977 RAB40C-201 protein_coding Homo_sapiens 0 747
ENST00000538492 RAB40C-202 protein_coding Homo_sapiens 0 747
ENST00000539661 RAB40C-203 protein_coding Homo_sapiens 0 747
ENST00000563109 RAB40C-003 protein_coding Homo_sapiens 0 311
ENST00000564703 RAB40C-005 protein_coding Homo_sapiens 0 300
ENST00000565511 RAB40C-004 nonsense_mediated_decay Homo_sapiens 0 259
ENST00000566290 RAB40C-008 protein_coding Homo_sapiens 0 628
ENST00000568586 RAB40C-009 protein_coding Homo_sapiens 0 553
ENST00000569575 RAB40C-007 protein_coding Homo_sapiens 0 449

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