C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB40C, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538492 RAB40C-202 ENSG00000197562 9606 + 16:590077-629271 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverOvaryPlacentaTestisENST00000538492
Transcript ID Adrenal Brain Breast Colon Heart Liver Ovary Placenta Testis
ENST00000538492 3.709±0.00 8.835±6.98 2.001±1.26 3.711±2.29 1.274±0.00 0.699±0.00 6.781±4.33 13.144±2.74 11.266±1.89

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026826 Rab40c-201 protein_coding Mus_musculus 0 1136
ENSMUST00000179998 Rab40c-202 protein_coding Mus_musculus 0 1129
ENSMUST00000167626 Rab40c-001 protein_coding Mus_musculus 0 1129
ENSMUST00000167018 Rab40c-005 protein_coding Mus_musculus 0 1109
ENSMUST00000166619 Rab40c-002 processed_transcript Mus_musculus 0 922
ENSMUST00000166146 Rab40c-003 nonsense_mediated_decay Mus_musculus 0 787
ENSDART00000087047 rab40c-001 protein_coding Danio_rerio 0 747
ENSMUST00000164982 Rab40c-004 protein_coding Mus_musculus 0 603
ENSMUST00000164738 Rab40c-006 protein_coding Mus_musculus 0 433
ENSMUST00000106107 Rab40b-001 protein_coding Mus_musculus 0 431
ENSMUST00000172168 Rab40c-007 processed_transcript Mus_musculus 0 427
ENSMUST00000135290 Rab40b-003 processed_transcript Mus_musculus 8e-23 113
ENSMUST00000124639 Rab40b-002 processed_transcript Mus_musculus 8e-23 113

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