C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107519 Trpm1-005 ENSMUSG00000030523 10090 + 7:64185552-64269757 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLungMuscleOvaryPlacentaTestisENSMUST00000107519
Transcript ID Adipose Bladder Brain Breast Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000107519 0.028±0.00 0.006±0.00 0.020±0.00 0.019±0.00 0.079±0.03 0.035±0.00 0.046±0.00 0.032±0.02 0.050±0.02 0.189±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081G CIL_00081G_0002 VISTA 7:63656077-64260826

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005261 IDA cation channel activity
GO:0007165 IGI signal transduction
GO:0016021 IEA integral component of membrane
GO:0035841 IDA new growing cell tip
GO:0046548 IMP retinal rod cell development
GO:0071482 IMP cellular response to light stimulus
GO:0098655 IDA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088033 trpm3-201 protein_coding Danio_rerio 0 298
ENSDART00000147188 trpm3-001 protein_coding Danio_rerio 0 285
ENST00000256552 TRPM1-004 protein_coding Homo_sapiens 0 4597
ENST00000397795 TRPM1-001 protein_coding Homo_sapiens 0 4610
ENST00000542188 TRPM1-201 protein_coding Homo_sapiens 0 4599
ENST00000557948 TRPM1-010 retained_intron Homo_sapiens 0 630
ENST00000558070 TRPM1-009 retained_intron Homo_sapiens 0 361
ENST00000558212 TRPM1-011 retained_intron Homo_sapiens 0 634
ENST00000558445 TRPM1-008 protein_coding Homo_sapiens 0 4599
ENST00000558768 TRPM1-007 protein_coding Homo_sapiens 0 4252
ENST00000559177 TRPM1-002 protein_coding Homo_sapiens 0 880
ENST00000560658 TRPM1-005 nonsense_mediated_decay Homo_sapiens 0 1070
ENST00000560801 TRPM1-006 nonsense_mediated_decay Homo_sapiens 0 2412
ENST00000611448 TRPM1-202 protein_coding Homo_sapiens 0 4615
ENST00000615583 TRPM1-203 protein_coding Homo_sapiens 0 4614
ENST00000617515 TRPM1-204 protein_coding Homo_sapiens 0 4641
ENST00000618210 TRPM1-205 protein_coding Homo_sapiens 0 4523
ENST00000621076 TRPM1-206 protein_coding Homo_sapiens 0 2423

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