C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B-cell factor 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000100508 ebf1b-201 ENSDARG00000069196 7955 - 21:32693166-32961001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000100508
Transcript ID Brain Heart Kidney Muscle
ENSDART00000100508 2.675±2.00 0.199±0.00 0.358±0.00 0.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016F CIL_00016F_0001 CGP 21:32470757-32961001

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110286 Ebf4-001 protein_coding Mus_musculus 0 516
ENSMUST00000110287 Ebf4-006 protein_coding Mus_musculus 0 516
ENSMUST00000110288 Ebf4-002 protein_coding Mus_musculus 0 516
ENSMUST00000126740 Ebf4-004 nonsense_mediated_decay Mus_musculus 0 516
ENSMUST00000134728 Ebf4-003 retained_intron Mus_musculus 0 505
ENSMUST00000140169 Ebf4-005 nonsense_mediated_decay Mus_musculus 0 516
ENST00000342725 EBF4-009 protein_coding Homo_sapiens 0 518
ENST00000380648 EBF4-201 protein_coding Homo_sapiens 0 518
ENST00000449079 EBF4-002 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000463145 EBF4-006 protein_coding Homo_sapiens 0 340
ENST00000609451 EBF4-011 protein_coding Homo_sapiens 0 518
ENST00000609967 EBF4-010 retained_intron Homo_sapiens 0 518

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