C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B-cell factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449079 EBF4-002 ENSG00000088881 9606 + 20:2692878-2760101 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMusclePlacentaTestisENST00000449079
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Placenta Testis
ENST00000449079 0.967±0.00 3.424±0.00 4.591±0.00 0.898±0.00 3.502±0.00 0.437±0.00 3.316±0.00 2.428±0.00 0.476±0.00 0.657±0.00 1.510±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_0000FY CIL_0000FY_0001 CGP 20:2658395-2760108
CIL_0000FX CIL_0000FX_0001 CGP 20:2692878-2800637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140169 Ebf4-005 nonsense_mediated_decay Mus_musculus 0 2257
ENSMUST00000110288 Ebf4-002 protein_coding Mus_musculus 0 2254
ENSMUST00000126740 Ebf4-004 nonsense_mediated_decay Mus_musculus 0 1973
ENSMUST00000110286 Ebf4-001 protein_coding Mus_musculus 0 1973
ENSMUST00000110287 Ebf4-006 protein_coding Mus_musculus 0 1881
ENSMUST00000134728 Ebf4-003 retained_intron Mus_musculus 0 1605
ENSDART00000100508 ebf1b-201 protein_coding Danio_rerio 0 518
ENSDART00000136729 ebf1b-001 protein_coding Danio_rerio 0 326

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