C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B-cell factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380648 EBF4-201 ENSG00000088881 9606 + 20:2692878-2760107 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000380648
Transcript ID Colon
ENST00000380648 1.425±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_0000FY CIL_0000FY_0001 CGP 20:2658395-2760108
CIL_0000FX CIL_0000FX_0001 CGP 20:2692878-2800637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008134 IEA transcription factor binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110288 Ebf4-002 protein_coding Mus_musculus 0 2717
ENSMUST00000110286 Ebf4-001 protein_coding Mus_musculus 0 2438
ENSMUST00000126740 Ebf4-004 nonsense_mediated_decay Mus_musculus 0 2270
ENSMUST00000140169 Ebf4-005 nonsense_mediated_decay Mus_musculus 0 1973
ENSMUST00000110287 Ebf4-006 protein_coding Mus_musculus 0 1881
ENSMUST00000134728 Ebf4-003 retained_intron Mus_musculus 0 1605
ENSDART00000100508 ebf1b-201 protein_coding Danio_rerio 0 518
ENSDART00000136729 ebf1b-001 protein_coding Danio_rerio 0 326

Loading