C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zgc:171759
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000111053 zgc:171759-206 ENSDARG00000079909 7955 + 7:6799314-6800093 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverENSDART00000111053
Transcript ID Kidney Liver
ENSDART00000111053 0.812±0.00 0.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LK CIL_0000LK_0002 CGP 7:6799314-6801372

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006334 IEA nucleosome assembly
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 333
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 329
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 368
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 366
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 322
ENST00000541790 HIST1H2BG-001 protein_coding Homo_sapiens 0 307
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0 316

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