C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 3, H2ba
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078267 Hist3h2ba-001 ENSMUSG00000056895 10090 + 11:58948920-58949533 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078267 1.203±0.97 2.428±0.86 0.777±0.29 221.550±170.62 1.841±0.52 2.047±0.68 0.393±0.17 1.633±0.47 7.731±6.90 0.591±0.34 0.147±0.06 1.168±0.63 0.641±0.33 2.872±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_000A CGP 11:58948920-58956830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005654 TAS nucleoplasm
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 390
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 385
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 377
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 374
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 357
ENSDART00000152766 zgc:112234-001 protein_coding Danio_rerio 0 342
ENSDART00000103027 zgc:112234-201 protein_coding Danio_rerio 0 340
ENSDART00000111053 zgc:171759-206 protein_coding Danio_rerio 0 333
ENSDART00000121649 wu:fe11b02-203 protein_coding Danio_rerio 0 263
ENSDART00000103006 protein_coding Danio_rerio 0.00004 53
ENSDART00000089844 protein_coding Danio_rerio 0.00004 53
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 422
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 427
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 411
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 418
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 440
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 484
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 479
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 442
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 457
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 464
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 422
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 470
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 427
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 407
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 222
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 403
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 603
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 424
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 427
ENST00000465850 RP11-274J15.2-001 processed_pseudogene Homo_sapiens 0 351
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 436
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 457
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 440
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 429
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 472
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 411
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 424
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 479
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 446
ENST00000616182 HIST1H2BO-001 protein_coding Homo_sapiens 0 470
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0 532
ENST00000620458 HIST2H2BF-003 processed_transcript Homo_sapiens 1e-38 163
ENST00000621112 HIST1H2BM-001 protein_coding Homo_sapiens 0 414

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