C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bg
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541790 HIST1H2BG-001 ENSG00000273802 9606 - 6:26216066-26216692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000541790
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000541790 0.058±0.00 3.097±0.00 8.217±0.00 12.788±12.04 18.836±18.69 80.290±0.00 4.570±3.88 2.925±2.50 12.293±12.11 25.923±0.00 0.824±0.00 34.871±48.19 0.867±0.31 1.082±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_0009 CGP 6:26216066-26217367

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 NAS:IEA nucleosome
GO:0002227 IDA innate immune response in mucosa
GO:0003677 NAS:IEA DNA binding
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006334 NAS nucleosome assembly
GO:0019731 IDA antibacterial humoral response
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110476 Hist1h2bm-001 protein_coding Mus_musculus 0 473
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 460
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 444
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 411
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 0 375
ENSDART00000152449 zgc:171759-001 protein_coding Danio_rerio 0 339
ENSDART00000156838 ano9a-001 protein_coding Danio_rerio 0 339
ENSDART00000057788 zgc:171759-202 protein_coding Danio_rerio 0 331
ENSDART00000129255 ano9a-201 protein_coding Danio_rerio 0 331
ENSDART00000152388 zgc:171759-001 protein_coding Danio_rerio 0 318
ENSDART00000156508 zgc:173587-001 protein_coding Danio_rerio 0 316
ENSDART00000103017 zgc:171759-203 protein_coding Danio_rerio 0 309
ENSDART00000111053 zgc:171759-206 protein_coding Danio_rerio 0 307
ENSDART00000114327 wu:fe11b02-201 protein_coding Danio_rerio 0 307
ENSDART00000126590 zgc:173587-201 protein_coding Danio_rerio 0 305
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 305
ENSDART00000152761 zgc:171759-001 protein_coding Danio_rerio 0 305
ENSDART00000130784 zgc:173587-202 protein_coding Danio_rerio 0 303
ENSDART00000152766 zgc:112234-001 protein_coding Danio_rerio 0 300
ENSDART00000103027 zgc:112234-201 protein_coding Danio_rerio 0 298
ENSDART00000146977 zgc:171759-209 protein_coding Danio_rerio 0 298
ENSDART00000113626 zgc:171759-205 protein_coding Danio_rerio 0 298
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 281
ENSDART00000114767 CABZ01086354.1-201 protein_coding Danio_rerio 0 261
ENSMUST00000059808 H2bfm-001 protein_coding Mus_musculus 0.000003 57

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