C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 3, H2bb
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620438 HIST3H2BB-001 ENSG00000196890 9606 + 1:228458107-228460470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000620438
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000620438 0.144±0.00 0.306±0.00 0.032±0.00 0.372±0.08 0.079±0.00 0.420±0.20 0.205±0.10 0.061±0.03 0.174±0.10 0.623±0.03 0.046±0.00 0.275±0.20 0.049±0.00 0.224±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UD CIL_0000UD_0002 CGP 1:228456979-228460470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 532
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 520
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 518
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 518
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 514
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 510
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 508
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 499
ENSMUST00000091756 Hist1h2bl-001 protein_coding Mus_musculus 0 499
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 499
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 496
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 496
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 496
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 488
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 488
ENSMUST00000110455 Hist1h2bk-001 protein_coding Mus_musculus 0 481
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 477
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 472
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 438
ENSDART00000152766 zgc:112234-001 protein_coding Danio_rerio 0 344
ENSDART00000103027 zgc:112234-201 protein_coding Danio_rerio 0 342
ENSDART00000111053 zgc:171759-206 protein_coding Danio_rerio 0 316
ENSDART00000121649 wu:fe11b02-203 protein_coding Danio_rerio 0 279
ENSMUST00000091703 Hist1h3b-001 protein_coding Mus_musculus 0.0000009 60
ENSMUST00000062045 Hist1h1e-001 protein_coding Mus_musculus 0.000003 58
ENSDART00000103006 protein_coding Danio_rerio 0.00004 55
ENSMUST00000108817 Hist3h2a-001 protein_coding Mus_musculus 0.0002 53
ENSMUST00000047697 Trim17-002 protein_coding Mus_musculus 0.0002 53

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