C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 3, H2bb, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117558 Hist3h2bb-ps-001 ENSMUSG00000080712 10090 - 11:58954048-58954512 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117558
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117558 0.119±0.01 0.213±0.00 0.080±0.03 5.632±2.29 0.278±0.20 0.198±0.00 0.106±0.00 0.495±0.21 1.781±1.54 0.559±0.35 0.251±0.12 0.742±0.61 0.158±0.01 1.152±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_000A CGP 11:58948920-58956830

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 379
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 374
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 363
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 363
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 346
ENSDART00000152766 zgc:112234-001 protein_coding Danio_rerio 0 339
ENSDART00000103027 zgc:112234-201 protein_coding Danio_rerio 0 337
ENSDART00000111053 zgc:171759-206 protein_coding Danio_rerio 0 329
ENSDART00000121649 wu:fe11b02-203 protein_coding Danio_rerio 0 279
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 424
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 429
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 407
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 435
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 435
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 466
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 460
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 433
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 424
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 464
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 429
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 220
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 490
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 472
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 422
ENST00000465850 RP11-274J15.2-001 processed_pseudogene Homo_sapiens 0 361
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 435
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 424
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 466
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 407
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 472
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 462
ENST00000616182 HIST1H2BO-001 protein_coding Homo_sapiens 0 460
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0 523
ENST00000621112 HIST1H2BM-001 protein_coding Homo_sapiens 0 405

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