C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084207 Arhgef10-001 ENSMUSG00000071176 10090 + 8:14911663-15001085 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084207
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084207 5.032±0.37 2.232±0.94 8.364±0.29 2.108±0.35 3.382±0.69 1.934±0.15 2.339±0.45 2.494±0.39 0.444±0.18 9.348±1.40 0.820±0.20 4.571±1.69 2.551±0.90 5.398±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GL CIL_0007GL_0003 CGP 8:14881335-15001085
CIL_0000LF CIL_0000LF_0002 CGP 8:14911663-15033333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005813 IEA centrosome
GO:0019894 IEA kinesin binding
GO:0022011 IEA myelination in peripheral nervous system
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0033126 IEA positive regulation of GTP catabolic process
GO:0051298 IEA centrosome duplication
GO:0051496 IEA positive regulation of stress fiber assembly
GO:0090307 IEA spindle assembly involved in mitosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111966 arhgef10lb-201 protein_coding Danio_rerio 1e-39 171
ENSDART00000134741 arhgef10lb-001 protein_coding Danio_rerio 1e-39 171
ENST00000349830 ARHGEF10-003 protein_coding Homo_sapiens 0 2804
ENST00000398560 ARHGEF10-201 protein_coding Homo_sapiens 0 821
ENST00000398564 ARHGEF10-202 protein_coding Homo_sapiens 0 2795
ENST00000518288 ARHGEF10-001 protein_coding Homo_sapiens 0 2793
ENST00000520359 ARHGEF10-002 protein_coding Homo_sapiens 0 2228
ENST00000520972 ARHGEF10-006 retained_intron Homo_sapiens 0 821
ENST00000522435 ARHGEF10-004 protein_coding Homo_sapiens 0 1389
ENST00000523711 ARHGEF10-005 retained_intron Homo_sapiens 0 1471
ENST00000610399 ARHGEF10-203 protein_coding Homo_sapiens 0 2795
ENST00000616718 ARHGEF10-204 protein_coding Homo_sapiens 0 821
ENST00000619613 ARHGEF10-205 protein_coding Homo_sapiens 0 2804

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