C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163062 Arhgef10-007 ENSMUSG00000071176 10090 + 8:14945301-15001082 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryENSMUST00000163062
Transcript ID Adrenal Breast Colon Liver Lung Ovary
ENSMUST00000163062 3.268±1.70 6.240±0.20 1.722±0.33 0.269±0.09 4.098±0.40 4.195±1.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GL CIL_0007GL_0003 CGP 8:14881335-15001085
CIL_0000LF CIL_0000LF_0002 CGP 8:14911663-15033333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111966 arhgef10lb-201 protein_coding Danio_rerio 7e-40 171
ENSDART00000134741 arhgef10lb-001 protein_coding Danio_rerio 7e-40 171
ENST00000349830 ARHGEF10-003 protein_coding Homo_sapiens 0 1393
ENST00000398560 ARHGEF10-201 protein_coding Homo_sapiens 0 798
ENST00000398564 ARHGEF10-202 protein_coding Homo_sapiens 0 1393
ENST00000518288 ARHGEF10-001 protein_coding Homo_sapiens 0 1389
ENST00000520359 ARHGEF10-002 protein_coding Homo_sapiens 0 1393
ENST00000520972 ARHGEF10-006 retained_intron Homo_sapiens 0 798
ENST00000522435 ARHGEF10-004 protein_coding Homo_sapiens 0 2134
ENST00000523711 ARHGEF10-005 retained_intron Homo_sapiens 0 1384
ENST00000610399 ARHGEF10-203 protein_coding Homo_sapiens 0 1393
ENST00000616718 ARHGEF10-204 protein_coding Homo_sapiens 0 798
ENST00000619613 ARHGEF10-205 protein_coding Homo_sapiens 0 1393

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