C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000112567 ppfia4-001 ENSDARG00000053205 7955 + 11:23207954-23415636 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000112567
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000112567 3.997±0.00 1.558±0.18 0.082±0.00 0.043±0.00 0.526±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TW CIL_0000TW_0001 CGP 11:23196844-23415636
CIL_0000TV CIL_0000TV_0001 CGP 11:23207954-23432785

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272198 PPFIA4-002 protein_coding Homo_sapiens 0 627
ENST00000295706 PPFIA4-201 protein_coding Homo_sapiens 0 316
ENST00000367240 PPFIA4-001 protein_coding Homo_sapiens 0 627
ENST00000447715 PPFIA4-005 protein_coding Homo_sapiens 0 627
ENST00000486360 PPFIA4-003 retained_intron Homo_sapiens 0 320
ENST00000530548 PPFIA1-006 processed_transcript Homo_sapiens 0 213
ENST00000594656 PPFIA4-011 retained_intron Homo_sapiens 0 285
ENST00000599966 PPFIA4-008 protein_coding Homo_sapiens 0 316
ENST00000600426 PPFIA4-004 protein_coding Homo_sapiens 0 627

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