C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000129530 rps27a-001 ENSDARG00000032725 7955 + 6:6187501-6190334 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000129530
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000129530 261.646±58.28 1002.705±717.40 600.792±590.99 501.808±0.00 642.311±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z4 CIL_0000Z4_0001 CGP 6:6187501-6212328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339647 UBC-001 protein_coding Homo_sapiens 0 241
ENST00000536769 UBC-007 protein_coding Homo_sapiens 0 241
ENST00000538617 UBC-003 protein_coding Homo_sapiens 0 241
ENST00000546120 UBC-201 protein_coding Homo_sapiens 0 241
ENST00000546846 RP3-432I18.1-001 processed_pseudogene Homo_sapiens 1e-26 122

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