C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546120 UBC-201 ENSG00000150991 9606 - 12:124911704-124914601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000546120
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000546120 125.435±0.00 142.031±0.00 113.148±0.00 114.612±0.00 155.921±0.00 96.257±0.00 119.916±0.00 44.151±0.00 258.870±0.00 203.963±0.00 127.324±56.34 139.389±45.04 127.942±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006N CIL_00006N_0002 CGP 12:124776856-124917368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 898
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 898
ENSMUST00000136938 Ubb-002 protein_coding Mus_musculus 0 837
ENSMUST00000019649 Ubb-001 protein_coding Mus_musculus 0 837
ENSMUST00000111388 Gm1821-001 processed_pseudogene Mus_musculus 0 835
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 793
ENSDART00000035235 UBC-001 protein_coding Danio_rerio 0 785
ENSDART00000123908 UBC-201 protein_coding Danio_rerio 0 780
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 769
ENSMUST00000165126 Uba52-201 protein_coding Mus_musculus 0 303
ENSMUST00000124967 Uba52-006 protein_coding Mus_musculus 0 303
ENSMUST00000135446 Uba52-002 protein_coding Mus_musculus 0 303
ENSMUST00000081940 Uba52-005 protein_coding Mus_musculus 0 303
ENSMUST00000125184 Uba52-001 protein_coding Mus_musculus 0 303
ENSMUST00000129909 Uba52-003 protein_coding Mus_musculus 0 303
ENSMUST00000140679 Uba52-004 protein_coding Mus_musculus 0 303
ENSMUST00000138260 Kxd1-007 protein_coding Mus_musculus 0 303
ENSMUST00000121623 Kxd1-005 protein_coding Mus_musculus 0 303
ENSMUST00000089430 Gm11808-001 protein_coding Mus_musculus 0 303
ENSMUST00000118642 Gm7331-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000082002 Gm7808-201 protein_coding Mus_musculus 0 298
ENSMUST00000119491 Gm11517-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000081864 Gm5239-201 protein_coding Mus_musculus 0 281
ENSDART00000097583 ubb-001 protein_coding Danio_rerio 0 272
ENSDART00000060745 uba52-001 protein_coding Danio_rerio 0 259
ENSDART00000156859 rps27a-002 protein_coding Danio_rerio 0 241
ENSDART00000129530 rps27a-001 protein_coding Danio_rerio 0 241
ENSMUST00000118611 Gm12328-001 processed_pseudogene Mus_musculus 0 230
ENSDART00000154932 rps27a-005 processed_transcript Danio_rerio 6.02558e-44 182
ENSMUST00000127793 Uba52-007 retained_intron Mus_musculus 6e-34 148
ENSDART00000157035 rps27a-004 retained_intron Danio_rerio 2e-28 130
ENSDART00000156817 rps27a-003 retained_intron Danio_rerio 2e-28 130

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