C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538617 UBC-003 ENSG00000150991 9606 - 12:124911646-124915303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000538617
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000538617 172.446±0.00 164.947±0.00 36.555±0.00 158.878±66.51 129.904±45.13 132.715±84.40 90.402±38.27 90.619±40.62 72.843±3.06 218.487±136.06 181.432±63.45 103.730±74.78 281.890±66.29 198.304±49.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006N CIL_00006N_0002 CGP 12:124776856-124917368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 1197
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 1197
ENSMUST00000019649 Ubb-001 protein_coding Mus_musculus 0 1103
ENSDART00000035235 UBC-001 protein_coding Danio_rerio 0 1068
ENSDART00000123908 UBC-201 protein_coding Danio_rerio 0 1027
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 992
ENSMUST00000136938 Ubb-002 protein_coding Mus_musculus 0 878
ENSMUST00000111388 Gm1821-001 processed_pseudogene Mus_musculus 0 846
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 793
ENSMUST00000165126 Uba52-201 protein_coding Mus_musculus 0 303
ENSMUST00000124967 Uba52-006 protein_coding Mus_musculus 0 303
ENSMUST00000135446 Uba52-002 protein_coding Mus_musculus 0 303
ENSMUST00000081940 Uba52-005 protein_coding Mus_musculus 0 303
ENSMUST00000125184 Uba52-001 protein_coding Mus_musculus 0 303
ENSMUST00000129909 Uba52-003 protein_coding Mus_musculus 0 303
ENSMUST00000140679 Uba52-004 protein_coding Mus_musculus 0 303
ENSMUST00000138260 Kxd1-007 protein_coding Mus_musculus 0 303
ENSMUST00000121623 Kxd1-005 protein_coding Mus_musculus 0 303
ENSMUST00000089430 Gm11808-001 protein_coding Mus_musculus 0 303
ENSMUST00000118642 Gm7331-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000082002 Gm7808-201 protein_coding Mus_musculus 0 298
ENSDART00000097583 ubb-001 protein_coding Danio_rerio 0 289
ENSMUST00000119491 Gm11517-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000081864 Gm5239-201 protein_coding Mus_musculus 0 281
ENSDART00000060745 uba52-001 protein_coding Danio_rerio 0 259
ENSDART00000156859 rps27a-002 protein_coding Danio_rerio 0 241
ENSDART00000129530 rps27a-001 protein_coding Danio_rerio 0 241
ENSMUST00000118611 Gm12328-001 processed_pseudogene Mus_musculus 0 230
ENSDART00000154932 rps27a-005 processed_transcript Danio_rerio 9.94922e-44 182
ENSMUST00000127793 Uba52-007 retained_intron Mus_musculus 1e-33 148
ENSDART00000157035 rps27a-004 retained_intron Danio_rerio 4e-28 130
ENSDART00000156817 rps27a-003 retained_intron Danio_rerio 4e-28 130

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