C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339647 UBC-001 ENSG00000150991 9606 - 12:124911648-124915147 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000339647
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000339647 98.746±0.00 79.910±0.00 113.515±0.00 92.181±6.79 111.088±0.00 72.296±0.00 77.357±11.07 64.832±29.95 133.483±24.64 136.901±0.00 49.130±19.24 148.514±45.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006N CIL_00006N_0002 CGP 12:124776856-124917368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000187 TAS activation of MAPK activity
GO:0000209 TAS protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0002020 IPI protease binding
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0002755 TAS MyD88-dependent toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0005515 IPI:IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0005978 TAS glycogen biosynthetic process
GO:0006006 TAS glucose metabolic process
GO:0006281 TAS DNA repair
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006915 TAS apoptotic process
GO:0006977 TAS DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0007220 TAS Notch receptor processing
GO:0007249 TAS I-kappaB kinase/NF-kappaB signaling
GO:0007254 TAS JNK cascade
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010008 TAS endosome membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0019068 TAS virion assembly
GO:0019082 TAS viral protein processing
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030512 TAS negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030666 TAS endocytic vesicle membrane
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0032479 TAS regulation of type I interferon production
GO:0032480 TAS negative regulation of type I interferon production
GO:0032481 TAS positive regulation of type I interferon production
GO:0034134 TAS toll-like receptor 2 signaling pathway
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0034146 TAS toll-like receptor 5 signaling pathway
GO:0034162 TAS toll-like receptor 9 signaling pathway
GO:0034166 TAS toll-like receptor 10 signaling pathway
GO:0034220 TAS ion transmembrane transport
GO:0035666 TAS TRIF-dependent toll-like receptor signaling pathway
GO:0035872 TAS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0038123 TAS toll-like receptor TLR1:TLR2 signaling pathway
GO:0038124 TAS toll-like receptor TLR6:TLR2 signaling pathway
GO:0042059 TAS negative regulation of epidermal growth factor receptor signaling pathway
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042981 TAS regulation of apoptotic process
GO:0043065 TAS positive regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0043123 TAS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0050852 TAS T cell receptor signaling pathway
GO:0051092 TAS positive regulation of NF-kappaB transcription factor activity
GO:0051403 TAS stress-activated MAPK cascade
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0055085 TAS transmembrane transport
GO:0061024 TAS membrane organization
GO:0061418 TAS regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070062 IDA extracellular vesicular exosome
GO:0070423 TAS nucleotide-binding oligomerization domain containing signaling pathway
GO:0071456 TAS cellular response to hypoxia
GO:0075733 TAS intracellular transport of virus
GO:0097190 TAS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 2658
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 2656
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 1746
ENSDART00000035235 UBC-001 protein_coding Danio_rerio 0 1646
ENSMUST00000019649 Ubb-001 protein_coding Mus_musculus 0 1109
ENSDART00000123908 UBC-201 protein_coding Danio_rerio 0 1094
ENSMUST00000136938 Ubb-002 protein_coding Mus_musculus 0 881
ENSMUST00000111388 Gm1821-001 processed_pseudogene Mus_musculus 0 857
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 793
ENSMUST00000165126 Uba52-201 protein_coding Mus_musculus 0 303
ENSMUST00000124967 Uba52-006 protein_coding Mus_musculus 0 303
ENSMUST00000135446 Uba52-002 protein_coding Mus_musculus 0 303
ENSMUST00000081940 Uba52-005 protein_coding Mus_musculus 0 303
ENSMUST00000125184 Uba52-001 protein_coding Mus_musculus 0 303
ENSMUST00000129909 Uba52-003 protein_coding Mus_musculus 0 303
ENSMUST00000140679 Uba52-004 protein_coding Mus_musculus 0 303
ENSMUST00000138260 Kxd1-007 protein_coding Mus_musculus 0 303
ENSMUST00000121623 Kxd1-005 protein_coding Mus_musculus 0 303
ENSMUST00000089430 Gm11808-001 protein_coding Mus_musculus 0 303
ENSDART00000097583 ubb-001 protein_coding Danio_rerio 0 300
ENSMUST00000118642 Gm7331-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000082002 Gm7808-201 protein_coding Mus_musculus 0 298
ENSMUST00000183770 Gm7866-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000119491 Gm11517-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000081864 Gm5239-201 protein_coding Mus_musculus 0 281
ENSDART00000060745 uba52-001 protein_coding Danio_rerio 0 259
ENSDART00000156859 rps27a-002 protein_coding Danio_rerio 0 241
ENSDART00000129530 rps27a-001 protein_coding Danio_rerio 0 241
ENSMUST00000118611 Gm12328-001 processed_pseudogene Mus_musculus 0 230
ENSDART00000154932 rps27a-005 processed_transcript Danio_rerio 2.00386e-43 182
ENSMUST00000127793 Uba52-007 retained_intron Mus_musculus 1e-35 156
ENSDART00000157035 rps27a-004 retained_intron Danio_rerio 8e-28 130
ENSDART00000156817 rps27a-003 retained_intron Danio_rerio 8e-28 130
ENSMUST00000119963 Gm13815-001 processed_pseudogene Mus_musculus 4e-26 124

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