C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000135846 zfhx4-001 ENSDARG00000075542 7955 - 24:23850262-23928171 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSDART00000135846
Transcript ID Brain Kidney
ENSDART00000135846 1.791±0.19 0.383±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P3 CIL_0007P3_0005 UCNEbase 24:23501458-24248521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026284 Zfhx4-201 protein_coding Mus_musculus 0 1327
ENSMUST00000043896 Zfhx3-001 protein_coding Mus_musculus 5.99994e-41 176
ENSMUST00000175641 Zfhx4-004 retained_intron Mus_musculus 0 222
ENSMUST00000175866 Zfhx4-002 protein_coding Mus_musculus 0 1218
ENSMUST00000176175 Zfhx4-005 protein_coding Mus_musculus 0 257
ENSMUST00000176383 Zfhx4-001 protein_coding Mus_musculus 0 1327
ENST00000458716 ZFHX4-003 retained_intron Homo_sapiens 0 1221
ENST00000517585 ZFHX4-008 protein_coding Homo_sapiens 0 416
ENST00000517683 ZFHX4-001 processed_transcript Homo_sapiens 0 233
ENST00000518282 ZFHX4-005 protein_coding Homo_sapiens 0 1652
ENST00000520307 ZFHX4-007 protein_coding Homo_sapiens 0 416
ENST00000521891 ZFHX4-002 protein_coding Homo_sapiens 0 1652
ENST00000523809 ZFHX4-009 protein_coding Homo_sapiens 0 374
ENST00000523885 ZFHX4-006 protein_coding Homo_sapiens 0 285

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